barSeed - Barley Seed Development Database

Probe CUST_14447_PI390587928

Source Contig U35_19430

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14447_PI390587928	Hv_44K_v2	CTATGCTGTAGGCAGCGTTTTAGGAAATATGGTAATATCACTTGCTGATCAGCCTTCCAC	753	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372341	1408	2e-24	868 - 927	100	60 / 60	plus	ABC13280
MLOC	MLOC_33783.2	1121	2e-24	935 - 994	100	60 / 60	plus	ABC13280
MLOC	MLOC_33783.3	1380	2e-24	941 - 1000	100	60 / 60	plus	ABC13280
MLOC	MLOC_33783.1	1335	2e-24	1035 - 1094	100	60 / 60	plus	ABC13280
MLOC	MLOC_33783.4	1292	2e-24	932 - 991	100	60 / 60	plus	ABC13280
JLOC1	JLOC1_21837.4	1122	8e-25	765 - 824	100	60 / 60	plus
JLOC1	JLOC1_21837.2	1242	8e-25	885 - 944	100	60 / 60	plus
JLOC1	JLOC1_21837.1	1266	8e-25	909 - 968	100	60 / 60	plus
Harvest21	ABC13280	1192	3e-25	532 - 591	100	60 / 60	minus	ABC13280
Harvest21	ABC13279	761	3e-25	702 - 761	100	60 / 60	plus
Harvest35	U35_32780	773	3e-25	405 - 464	100	60 / 60	plus
Harvest35	U35_19431	1261	3e-25	602 - 661	100	60 / 60	plus
Harvest35	U35_19430	813	3e-25	754 - 813	100	60 / 60	plus

Contig Sequence (813 bp)

>U35_19430 813 Hv_44K_v2
GATCTCCTCGCCGTGGTCTCTCTTCCTCCCCCACTCCTCCCTCTCCCCTCCGGCCACCGG
CGCGGCTGCTTCCCCCCTCTCCGTCCCTCTCCGCGCGACAGGGTCTGGTGGCGCGGATTC
GTCCCGAAGCCGATCGAACCGGTTCGTTCGTTGGAGCGTAATGGCGAGCCTGCAGCCTTC
CCTCCCCGAGCCCTCCTCCTTCGCCGGGGCCTCGCCGCCGTCTCCCTCCCCGATCGGTGG
AGGCGCCGGTGGCGGCTCTGCCTCGGCGGCGCAGGAGCCCAGGAAGATGGCGTCGGCGGA
GCAGCTGGTGCTCGACCTGTGCGACCGCGAGCTGCGCGAGAACGCCCTCCTCGAGCTGTC
CAAGAAACGAGAGATATTCCAAGACCTGGCCCCGCTTCTCTGGCACTCTTTTGGCACAAT
TGCTGCACTGCTTCAGGAAATTGTGTCGATCTACCCTGCACTTTCACCCCCAACTTTGTC
ACCAGGTGCATCAAACCGAGTCTGCAACGCACTTGCACTTCTTCAGTGTGTTGCATCGCA
CCCTGATACCAGAATCCCTTTCTTAAATGCTCATGTGCCGCTGTTCTTGTATCCGTTCCT
GAATACATTCAGCAAGACAAGGCCTTTTGAGTACTTGCGGCTTACCAGCCTGGGTGTCAT
CGGTGCTCTTGTTAAGGTCGCTACCTTCATCGTCCAAAAGATTCTGCTGGATGATATTGG
ACTGCACTACGTATGTGCCACCGCTGAGCGTTTCTATGCTGTAGGCAGCGTTTTAGGAAA
TATGGTAATATCACTTGCTGATCAGCCTTCCAC

Homology of Contig U35_19430 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57130.1	331	5e-101	protein\|expressed protein
Brachypodium v1_2	Bradi5g21620.1	321	2e-100
Arabidopsis v10	AT3G20800.1	316	3e-89	Cell differentiation, Rcd1-like protein \| chr3:7271412-7273897 REVERSE LENGTH=316