barSeed - Barley Seed Development Database

Probe CUST_14446_PI390587928

Source Contig U35_19431

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14446_PI390587928	Hv_44K_v2	TGAACGTCTACTAGGGAAGTAGCACATTATGCGGATGCAATTCTGAACAGTTAAACCCCC	1184	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20990.1	362	9e-22	292 - 346	100	55 / 55	plus	ABC13280
Harvest35	U35_19431	1261	3e-25	1185 - 1244	100	60 / 60	plus

Contig Sequence (1261 bp)

>U35_19431 1261 Hv_44K_v2
TTCTCTCTGATATAACTTGAAACCACTTCACAGTTTATAGACTTATAAAAGGTGTATTAT
GCGAAAAACCTCAAATGCTGTTTGGCTTTGGCAATCAGTAATTGACCTATGCTGCTAAGG
GCGTTGCGTTACTATTATCAGTTATCAATTGGACTGGAAGATCAATAACTTTGTGGATAC
ATAAATATGCCAACGTTTTTGCAACATCTTTCCTGTATAACCCACAGCCACAGGAGTTGA
ATATTTTGAGGTGCTTAAGGCCCTGTTTGGATTGTCGTTTTACTTTGAAATACACCTGTA
AAAAATACATGCCTTGCTCTGTCGTTTTGTTTCCAGCCCAAAATTACTCAGTTGCCAGTA
TGGCGTAAGTTAAAACACCTCCGCATTCGATTACACCGTTCCCAAGCGCGCCCTAAGATT
AATTTGGGTGGAATACAAGTTGAGGCTTGGCCACACGGGGTCTTATACAGATAATGATAT
AAATGCATCCAGTTTCATTAATTTAGTTAAATATGCATAAGCAGGTCGCTACCTTCATCG
TCCAAAAGATTCTGCTGGATGATATTGGACTGCACTACGTATGTGCCACCGCTGAGCGTT
TCTATGCTGTAGGCAGCGTTTTAGGAAATATGGTAATATCACTTGCTGATCAGCCTTCCA
CAAGGTTGCTCAAGCACATTATTCGATGTTACCTCAGGCTGTCAGATAACCCCAGGGCCT
GTGTTGCACTACATAATTGCCTCCCTGACATGCTGAAAGATGGGACGTTCAACATTTCTC
TTAGGGATGACCCCGCGACAAGGCGCTGGCTCCAACAACTGCTGCATAACGTGACAGTGG
GTGGTATGGGAGGACCTGGCATGGGGGTGCCTCCCCAGCCGGGCCTGGATCACATGATGG
GGATATGATCCAGTTTAGTTGCTGCGATTCACAACAATAATGGAGTCCCTTGTGAATTGC
GGGTAGGGGAAGATTATCTTCCCTCGGCCTTCTAGAAGTAGGTTGTGCGATGTCGGTGTA
GTTTCAACCTTACGGAAAAAGGAAATGTTGTGTTGTGTGTGTGTCGAAACATCAGCAGCA
GCTCAAGCTGGTTTGCTTATCCTGTAATACTGTGAACACAAGCAAGGCAAGCTGTTTTCT
GCTTTTCTGGTGTTGCAGCGGAAATGTTTTTTTTCTATCGAGGTTGAACGTCTACTAGGG
AAGTAGCACATTATGCGGATGCAATTCTGAACAGTTAAACCCCCCCAAAAAAAAAAAAAA
A

Homology of Contig U35_19431 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37790.1	342	2e-55	protein\|expressed protein
Brachypodium v1_2	Bradi5g21620.1	321	6e-54
Arabidopsis v10	None