barSeed - Barley Seed Development Database

Probe CUST_14436_PI390587928

Source Contig U35_45700

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14436_PI390587928	Hv_44K_v2	GCACACAGCCTAGCTGTATTCTGTTTTTGTAGAACTATTGGGTGAAATAAATACATTATG	24	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.299	1.888	3.375	1.860	0.172	0.117
Raw	1168.962	2686.899	3994.547	3346.927	119.798	84.984

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39346.1	1439	7e-23	73 - 133	98	60 / 61	minus	ABC44874
MLOC	MLOC_39346.2	1144	7e-23	73 - 133	98	60 / 61	minus	ABC44874
JLOC1	JLOC1_25648.2	1106	4e-23	974 - 1034	98	60 / 61	plus
JLOC1	JLOC1_25648.1	1401	4e-23	1269 - 1329	98	60 / 61	plus
Harvest21	ABC44874	620	3e-25	25 - 84	100	60 / 60	minus	ABC44874
Harvest35	U35_45700	620	3e-25	25 - 84	100	60 / 60	minus

Contig Sequence (620 bp)

>U35_45700 620 Hv_44K_v2
TTTTTTTTTTTTTTTTGTGTTCTTCATAATGTATTTATTTCACCCAATAGTTCTACAAAA
ACAGAATACAGCTAGGCTGTGTGCTCATTAATTGCATGGGTTGATGACTGGTTCATGACT
AATTGAGATGGTGATACATGAATAAAAATTCCAGGAAGCTAGCGCGTGAAACAGATCTTG
GTTGCAACAAACATGTCTTCATGCCTCAAAAGGAAATTCTCCTAGCAAGCATGGAGCAAA
GGTATGTCTGCATACGGACCGTTGAGCACCCCGTTGGCGATGACATTGTATGCCTTCTCC
GTCATGTGAACCTGGTCCCAGTTGGCGAACCTGGACGGTTCGCGGCAAATCTTTGCGTTC
TGGTCGCACCCATGGCCGGTGCCATAAGGGCCGTTGCCACCACAACACGCCACCAGAGGG
TTGTCGACGCCGTTCCTCTTGGGGTTCCTGACAAACTCCATGGCGGCGCCATAGTAGTCT
GCATAGATGATCTTCACGCTGGGGTTGCGAGACCTGAGCCGGCCGATCTCCACCTTCAAC
AACTGGTTATGCTTCTGGGAGAATGCGTTATACCACTTGAGGCAGCTGAACTGGTCGTAG
TCTGTAGACTTGTTGCTCTT

Homology of Contig U35_45700 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g46220.1	371	8e-57	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi2g45230.1	368	1e-67
Arabidopsis v10	None