barSeed - Barley Seed Development Database

Probe CUST_1436_PI390587928

Source Contig U35_30025

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1436_PI390587928	Hv_44K_v2	GCAGTACCAAGTGATAATCTCAAGGTAGATGATCATACATAGAAGTATGTCTAGAAGTTT	349	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365747	2356	2e-24	2297 - 2356	100	60 / 60	minus	ABC08067
MLOC	MLOC_44725.3	1795	2e-24	43 - 102	100	60 / 60	minus	ABC29668
MLOC	MLOC_44725.2	2424	2e-24	613 - 672	100	60 / 60	minus	ABC29668
MLOC	MLOC_44725.1	3410	2e-24	1602 - 1661	100	60 / 60	minus	ABC08067 ABC29668
JLOC1	JLOC1_29003.3	2290	8e-25	1697 - 1756	100	60 / 60	plus
JLOC1	JLOC1_29003.2	2343	8e-25	1750 - 1809	100	60 / 60	plus
JLOC1	JLOC1_29003.1	2303	8e-25	1710 - 1769	100	60 / 60	plus
JLOC1	JLOC1_29002.1	1516	8e-25	1354 - 1413	100	60 / 60	minus
Harvest21	ABC29668	426	3e-25	350 - 409	100	60 / 60	plus	ABC29668
Harvest35	U35_30025	426	3e-25	350 - 409	100	60 / 60	plus

Contig Sequence (426 bp)

>U35_30025 426 Hv_44K_v2
CTATTCCTCAAGTCCAACTAAGCACTCTCTGGATGGGGCATTTGCTGCTCGTCTTGTCCG
GTCAATGCACTAGGACTCGTACAACTAGTTTTTAGAAGGGGGTAGTCTTCTGCGCTCTGC
GGTCCATCTTGCTTCTTGGACTGCATATAGTAAGTTGTATCATAGACAGTAATGCTGAGG
TCATCCTTATAGGCACGCTCCACCATTTTGATGTTGAGTGCCACGATAATGTGTGTTGCG
AGCTAGATATACCTGGAGTTGTGCCTGGTCGATACCTGAGCATCTGTATTAGGTAGGCCC
TAGTGAAATTCCCTGATAAAGTGTGTTTGTTATGTATTATGTCTCTTGTGCAGTACCAAG
TGATAATCTCAAGGTAGATGATCATACATAGAAGTATGTCTAGAAGTTTATCAAAAAAAA
AAAAAA

Homology of Contig U35_30025 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None