barSeed - Barley Seed Development Database

Probe CUST_14360_PI390587928

Source Contig U35_18104

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14360_PI390587928	Hv_44K_v2	AACAATGTATGATTGCACCTTTTCCCGCCAAATATCATTATTGCAGAAATAGCTTCAACA	1659	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.974	1.971	0.875	0.985	0.342	0.505
Raw	448.205	277.577	111.139	204.426	22.943	38.049

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80445.1	2114	2e-24	1989 - 2048	100	60 / 60	plus	ABC15197 ABC18490 ABC30030
JLOC1	JLOC1_53557.3	1547	8e-25	1420 - 1479	100	60 / 60	plus
JLOC1	JLOC1_53557.2	2067	8e-25	1940 - 1999	100	60 / 60	plus
JLOC1	JLOC1_53557.1	1959	8e-25	1832 - 1891	100	60 / 60	plus
Harvest35	U35_18104	1758	3e-25	1660 - 1719	100	60 / 60	plus

Contig Sequence (1758 bp)

>U35_18104 1758 Hv_44K_v2
GGCTTGATAAGACTACACCATTAGTCCACCATTACCTTGATAGATGGAGGTGGAGACTGC
GATGCCTACTCCGGCGGCCGGGCTGGACCGCGTGGGCTCTGCCGCGCGGGAGCCGAATAC
ACGGAGGCCTCCTCGCCGTCGCCGGCGGCTGGAGGCAGCGCGAATGGCGCGGCGACCAAG
GTGCAGAAGGTCTACCGGAGCTACCGGACCAGGCGCAAGCTTGCCGACTCCGCCGTCGTC
GTCGAGGAGCTCTGGTGGCAAGCGCTGGACTTCGCGCGGCTAAACCACAGCACCGTCTCC
TTCTACGATGGCCCGGAGCCGGAGACCGCCGCCTCGCGCTGGAACCGCGTCAGCCTCAAT
GCATCCAAGGTGGGTCAGGGTTTATCCAAGGATGCTAAGGCTCTTAAGCTGGCTTTCCAG
CACTGGATCGAGGCTATTGATCCAAGGCATAGGTACGGGCACAACCTGCATTTCTACTAT
GATGCCTGGTCCCAGACCCAGGCTGGCCAGCCGTTCTTCTACTGGCTCGATATTGGTGAG
GGAAAAGATGTAGAGCTTCCAGAATGCTCAAGGGCTCTGCTGAAAAAGCAATGCATAAGA
TATCTTGGTCCACAAGAGCGTGAGTACTATGAATACATCATTAAAGAGGGAAAGATTATC
CACAGGGTATCTGAAGAAGCACTTGATACAAGCCAGGGCCCTAAAGGGACAAAATGGATT
TTTGTTATGAGCACAGCAAAGAAACTTTATGCTGGGCAGAAGGAGAAAGGTGTATTCCAG
CACTCCAGCTTTTTAGCAGGAGGTGCAACCATAGCTGCTGGAAGGTTTACTGCAGAAAAT
GGAGTTATCAAGTCCATTTGGGCCTATAGTGGACATTACAAGCCGAGTGGGGAGAACCTT
AACAACTTCATGAGCTTTCTAGAAGAAAATGGAGTTGATCTGAAAGAAGTTGAGGTGGGC
TCATCCACCAAGGAAGATTACTATGAAGATCCAGTGCCTAATATCAAGCAGAACCCTGCT
GCTGCTATGATGGCATCCAATACTCCACAATTGATTCTGCCTTCCAACATGGTAGAAGAA
GACAAGGCATCTGGGCCATCTTCACAGACTGAAGCTGACGAGGACAATAATGTCCGTGTG
GAGCAAGCAAGGCCAACCTACCAAAGAACCTTATCAGGTGGCCTGCAAAGTCCTAGAGAC
GCCGTCGTCTCGCAGGATGCAATTCTTGAGAGGGTGAATTCCAAGAGCAAGTCAAAATCC
TATCAGCTCGGCCACAGGCTATCCCTGAAATGGAGCACTGGAAATGGTCCAAGAATTGGG
TGTGTGAAGGATTATCCGATAGAGCTCAGAATGCAGGCGCTGGAGATGGTACAACTCTCG
CCGAGGGCGTCGACTCCTCCGGCCTCGTGGAGGGTACCATCATGCCTCTCCCCCACCTTG
CCAACGCCGCCGCTCATGCCATTGCAGGCATCCCTGCCCCAGCCAAGTTAGGAACTTGAG
TTTAAGGCAATAGCTGTGTAGTTCTGCTGCTTCATATTAGCTGGGTGCCGCAAAGGTCAC
AAGTTTGCGCTTGCTGTTTTACCTAGTTCCATGAACCCGTTTGTAGCTCGGATGGATCCG
GTGAAGATTGTATGAGTTCCAATTTGGTCGAATTGATTTAACAATGTATGATTGCACCTT
TTCCCGCCAAATATCATTATTGCAGAAATAGCTTCAACANAAAAAAAAAAAAAAAGACTC
GAGGGGGGGCTCAAGTAC

Homology of Contig U35_18104 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g05420.1	478	0.0	protein\|calmodulin-binding protein, putative, expressed
Brachypodium v1_2	Bradi4g42560.1	470	0.0
Arabidopsis v10	AT3G52870.1	456	4e-160	IQ calmodulin-binding motif family protein \| chr3:19593365-19595686 REVERSE LENGTH=456