barSeed - Barley Seed Development Database

Probe CUST_14359_PI390587928

Source Contig U35_18105

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14359_PI390587928	Hv_44K_v2	GTGCCAGACCCAGGCTGGCCAGCCCTTCTTCTACTGGCTTGATATTGGTGAGGGAAAAGA	567	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37774.1	1559	2e-24	1059 - 1118	100	60 / 60	plus	ABC15197 ABC18490
MLOC	MLOC_37774.2	1777	2e-24	574 - 633	100	60 / 60	plus	ABC15197 ABC18490 ABC30030
MLOC	MLOC_37774.3	1934	2e-24	731 - 790	100	60 / 60	plus	ABC15197 ABC18490 ABC30030
JLOC1	JLOC1_24498.1	1916	8e-25	609 - 668	100	60 / 60	plus
Harvest21	ABC18490	524	3e-25	389 - 448	100	60 / 60	plus	ABC18490
Harvest21	ABC18346	627	3e-25	568 - 627	100	60 / 60	plus
Harvest35	U35_18105	627	3e-25	568 - 627	100	60 / 60	plus
Harvest35	U35_8046	525	3e-25	389 - 448	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_18105 627 Hv_44K_v2
CGGACATAAATTCCAGCTGCTGCCTCCCCCTTCTTCCCTCCCCACCCCGCTCTCCCCCTC
CTCCTCGAGAAGAGCACGACCATCCCCCAACCCGCCCGACTCCAGAAGGCCACGACCATT
ATCTTGGCAGCAGATGGAGGTGGAGACCGCGATGCCTCCTCCGGCGGCCGCTGCCTCGCG
GGAGCCGAGCCACACGGAGGAGCTCTCCTCCTCGCCGTCGCCGGCGACCGGAGGCGGCGC
GAATGGCGCGGCCACCAAGGTGCAGAAGGTCTACCGGAGCTACCGGACCAGGCGCAAGCT
CGCCGACTCCGCCGTCGTCGTCGAGGAGCTCTGGTGGCAAGCGCTGGACTTCGCGCGGCT
CAACCACAGCACCGTCTCCTTCTACGACGACCCGGAGCCGGAGACCGCCGCCTCGCGCTG
GAACCGCGTCAGCCTCAACGCATCCAAGGTGGGGCAGGGTTTATCCAAGGACGCCAAGGC
TCTCAAGCTGGCTTTCCAGCACTGGATCGAGGCTATTGATCCAAGGCACAGGTACGGGCA
TAACCTGCATTTCTACTATGATGTCTGGTGCCAGACCCAGGCTGGCCAGCCCTTCTTCTA
CTGGCTTGATATTGGTGAGGGAAAAGA

Homology of Contig U35_18105 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g05420.1	478	2e-80	protein\|calmodulin-binding protein, putative, expressed
Brachypodium v1_2	Bradi4g42560.1	470	1e-82
Arabidopsis v10	AT3G52870.1	456	5e-67	IQ calmodulin-binding motif family protein \| chr3:19593365-19595686 REVERSE LENGTH=456