barSeed - Barley Seed Development Database

Probe CUST_14358_PI390587928

Source Contig U35_18106

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14358_PI390587928	Hv_44K_v2	GATTGCGCTTGCGCCTTTTCCCACCAAATGTCACTATTGCAGAAATAGCTTCAGCAGAAA	836	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.201	2.155	1.124	0.855	0.334	0.348
Raw	2061.470	3097.140	1430.597	1727.651	233.906	263.468

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_24498.1	1916	1e-23	1789 - 1846	100	58 / 58	plus
Harvest21	ABC15197	910	3e-25	15 - 74	100	60 / 60	minus	ABC15197
Harvest35	U35_18106	910	3e-25	837 - 896	100	60 / 60	plus

Contig Sequence (910 bp)

>U35_18106 910 Hv_44K_v2
CAGAAAATGGAGTTATCAAGTCCATCTGGGCTTATAGTGGACATTACAAACCGAGTGCGG
AGAATCTTAGCAACTTCATGAGTTTTCTAGAAGAGAATGGAGTTGATCTGAAAGAAGTTG
AGGTGCGCTCATCCACCAAGGAAGACTATTATGAAGACCCATCGCTTAATAGCAAACAGA
ACCCTGCTGCTGCTATCATGCCATCCAATCCTCCGCAGTTGATTCTCCCTTCCAACATGG
TGGAAGAAGGCAAGGCATCTGGGCCATCTTCTCAGACTGAAGCTGACGAGGGTGATAATC
TCCGTATGGAGAAAGCAAGGCCAGCCTACCAAAGAACCTTATCAGGTGGCCTGCAAAGCC
CTAGAGATGCCGGCGTCTCGCAGGATGCAATTCTTGAGAGGGTGAACTCCAAGAGCAAGT
CAAAATCCTATCAGCTCGGCCACAGGCTATCCCTGAAATGGAGCACTGGAAATGGTCCAA
GGATTGGGTGTGTGAAGGATTATCCAATAGAGCTCAGAATGCAAGCGCTGGAGATGGTAC
AGCTCTCGCCAAGAGCATCGACTCCTCCAGCCTCGTGGAGGGTGTCGTCATGCCTCTCCC
CCACCTCGCCAACCTCGCCGCTCGTGACAATACAGGCCTCCCTGCCCCAGCCAAGTTAGG
AACTTGAGTCTAGGCAATAGCTGTGTAGTTCTGCTGCTTCATGTTTGATGGGTGCTGCAA
AGGTCAAAGTTTGTGCTTGCTGTATTTCCTGTGTTCCTTGAATCCATTCGTAGCTCAGAT
GGATCTGGTCAGGATTGTATGAGTTCGAATTTGGTTGAATCGAATTGAGAATGTGTGATT
GCGCTTGCGCCTTTTCCCACCAAATGTCACTATTGCAGAAATAGCTTCAGCAGAAAAAAA
AAAAAAAAAA

Homology of Contig U35_18106 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g05420.1	478	7e-101	protein\|calmodulin-binding protein, putative, expressed
Brachypodium v1_2	Bradi4g42560.1	470	9e-108
Arabidopsis v10	None