barSeed - Barley Seed Development Database

Probe CUST_14325_PI390587928

Source Contig U35_24103

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14325_PI390587928	Hv_44K_v2	TTTTTTAAGAGGTAACGTTTGCATCAGCAGTCATGGCTGGGAATCTTTCCCTGCATGCTG	1190	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.111	1.492	0.942	0.936	0.578	0.587
Raw	81.056	85.132	50.255	75.200	16.309	17.834

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_38745.5	2330	4e-23	2274 - 2330	100	57 / 57	plus
JLOC1	JLOC1_38745.4	3851	4e-23	3795 - 3851	100	57 / 57	plus
JLOC1	JLOC1_38745.2	3842	4e-23	3786 - 3842	100	57 / 57	plus
JLOC1	JLOC1_38745.1	3799	4e-23	3743 - 3799	100	57 / 57	plus
Harvest21	ABC19891	1276	3e-25	1191 - 1250	100	60 / 60	plus	ABC19891
Harvest35	U35_24103	1276	3e-25	1191 - 1250	100	60 / 60	plus

Contig Sequence (1276 bp)

>U35_24103 1276 Hv_44K_v2
CAGGCGAGAAGCTATCTGAATCCATTAACCAAGCAAATGAGAACTGCAAGTACTTACCTG
GTATTAAGCTTGGAACTAATGTAGTTGCTGACCCCGACTTGGAGAGTGCAGTCAAAGACG
CGGATATGCTGGTCTTTGTGACTCCCCATCAATTTGTGGAGGGTATATGTAAGAAGCTTG
TGGGCAAACTAAGACCAGGAGTTGAGGCTATATCCCTCATCAAGGGCATGGAGGTCAAGA
TGGAAGGACCATGCATGATATCAAAACTAATTACCGATACACTTGGAATCAATTGTTGCG
TCCTCATGGGTGCTAACATTGCAAATGAGATCGCTGTTGAGAAGTTCAGTGAAGCAACAA
TTGGATATAGGAAAGATAAAGAAGCAGCAAACCGATGGGCTAAACTTTTCACAACTCCTT
ACTTCCTAGTTTCTGTTGTGGAAGATATTGAGGGAGTTGAACTATGTGGGACACTGAAAA
ATGTTGTGGCCATTGCAGCAGGACTTGTTGATGGCTTGGATATGGGAAACAACACCAAGG
CTGCAATAATGCGGATTGGTTTGCGGGAAATGCGTGCTTTCTCTAAACTTCTGTTCCCTT
CAGTCAGAGACAACACTTTCTTTGAGAGCTGCGGTGTGGCTGACCTTATAACTACGTGCC
TTGGTGGGAGAAACAGGAGAGTGGCAGAAGCCTTTGCAAGAAATGGTGGCAAAAGGTCTT
TTGATGAGCTAGAGGCAGAAATGTTGCATGGACAAAAACTCCAGGGGGTATCCACAGCAA
GAGAAGTCTATGAAGTGTTGACTTATCACGGATGGCAGGAACTATTTCCGCTTTTGTCAA
CTGTACATGAGATCTGTATTGGACAACTGCCACCTACATCAATAGTTGAATACAGGCTCC
GCTGAAGGTCACTCTTGAAGATGCCATCAAGAACAATTCAGGCTTCATAAAGTTTTCGAA
GACCAAGCACTCCATTACCTTCCAATTCCCGGCAAAGCAAGGCCCGGGAAGTTCTAGATG
CTAGATGCTAGCTCATTTCTGTTTATTCATTTGTGGCATCATCTGTCACATCTTACATAT
GTGCTGGCTTCAGCAAAACCAAACAAGGAGTCATCACCTGTTTGTAATAGTTTATAAACC
ATGCTCTTTGGAATTAGTGATGTGCCTTTGTTTTGCTCGGCTGTTAAATGTTTTTTAAGA
GGTAACGTTTGCATCAGCAGTCATGGCTGGGAATCTTTCCCTGCATGCTGGTTCCTCTCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_24103 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g74000.1	352	0.0	protein\|glycerol-3-phosphate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi2g62020.2	356	0.0
Arabidopsis v10	AT5G40610.1	400	2e-168	NAD-dependent glycerol-3-phosphate dehydrogenase family protein \| chr5:16265071-16267258 REVERSE LENGTH=400