barSeed - Barley Seed Development Database

Probe CUST_14215_PI390587928

Source Contig U35_12172

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14215_PI390587928	Hv_44K_v2	GTTTCAGTTCTCCATCTGAATCCTTGGGGTATGAATGTTGGAAGTGATTCTATTTTCAAA	611	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_25341.2	1697	7e-23	1223 - 1279	100	57 / 57	plus	ABC23356
MLOC	MLOC_25341.1	1428	7e-23	954 - 1010	100	57 / 57	plus	ABC23356
JLOC1	JLOC1_17332.1	1428	4e-23	954 - 1010	100	57 / 57	plus
Harvest35	U35_12172	684	3e-25	612 - 671	100	60 / 60	plus

Contig Sequence (684 bp)

>U35_12172 684 Hv_44K_v2
GCGTCCGCTGCTTGATTGGCCCCTGTGAAATCAGAATCTGCCTCGCGTTAGTGTGGCGGT
GCATCTTCTTGTTCAGTTTGATTTGATTTGGATTGGTTTGGTTTGAAAATCGTTGCTAGA
GGAAGTATGCATCACCTATTTGGTAGATGATGCATGGTAGTGCTATCTCTGAGCAATGGA
GAAATAAAAAAGAGAGGGCCTTCCGCCTGTGTTGCATGAGCGACCTGCCTGCTCATGCTG
CGGATTTGCCCTTGGTCTTCATTTGTGTGTTGTGGTGTGTGATCTGTCAGCTACAGACTG
ATTATTGTAATGCTAAGAAATTCCTTCGATTGTTGTACAAATGGTGATTTGTGCATGTCA
TCATATATAAGCTGCAGCTTTTTACGTTTTGTTCCGAGCTGATCATATAAGCTTGTAGAA
TTTAAACAAGTAGACGGTTTTTTCTTGAAAGGGTAGTAAAAAAAGACAGTTGTTACTGAG
AAATAAGCTAGAGTACAATAGAGTCCCCAAGGTCAGGGTGTTAAGTTGTATTTGTTGTTT
GTCTTTTCATGTGCCCTGCCTTAGCTTATTTGGTCAGATGTTAACTAGCTGCTAATAAGT
TGGAATAATCAGTTTCAGTTCTCCATCTGAATCCTTGGGGTATGAATGTTGGAAGTGATT
CTATTTTCAAAAAAAAAAAAAAAG

Homology of Contig U35_12172 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None