barSeed - Barley Seed Development Database

Probe CUST_14192_PI390587928

Source Contig U35_27691

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14192_PI390587928	Hv_44K_v2	TGAATATGTACCAGCACATTCGTGACGCCGTTGAAGAAAAGAGAGTACTTCTTGAGTGGG	539	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53533.3	3575	2e-24	906 - 965	100	60 / 60	minus	ABC13470
MLOC	MLOC_53533.4	3573	2e-24	906 - 965	100	60 / 60	minus	ABC13470
MLOC	MLOC_53533.2	3589	2e-24	961 - 1020	100	60 / 60	minus	ABC13470
MLOC	MLOC_53533.1	5124	2e-24	2459 - 2518	100	60 / 60	minus	ABC13470
JLOC1	JLOC1_34404.1	4533	8e-25	2505 - 2564	100	60 / 60	plus
Harvest21	ABC31674	655	3e-25	540 - 599	100	60 / 60	plus
Harvest35	U35_27691	655	3e-25	540 - 599	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_27691 655 Hv_44K_v2
GGTCAGTGGGGATGCTCTGAGAAGTTTGGCTGGGAAACTGAAAACTGATCTTTACACAAC
AGAGGATGCAGAGGATGATGAATATGTCAGTGATTCAGAAATTTCTGTGGATGTTGTAGA
AGACACTACCTCGTATGGCACTGCATACAAAGCATTTGGAGGTGGAAAGGAAGGAAAGGA
AGCATGTTATGCCATTGCAGCTCTCTGCGAGATCTGCTCTATTGATTCATTGATATCAAA
CTTTATTCTTCCCTTACAGGGAAATCGTATATCCTGTAAGGAGGGGAGGATCCACTGTTC
GTTAAATATCAACACCGAAACTGGACGTTTGTCAGCAAGGGCGCCGAATTTACAGAATCA
ACCTGCACTTGAAAAGGATCGGTACAAAATCCGGCAAGCTTTTGTTGCAGCTCCGGGGAA
CTCTCTTATTGTTGCTGATTATGGTCAGCTGGAGCTCAGGATCCTGGCACATCTTGCTAA
TTGTAAAAGTATGTTAGATGCCTTCAAAGCTGGCGGTGATTTCCATTCCAGGACAGCCAT
GAATATGTACCAGCACATTCGTGACGCCGTTGAAGAAAAGAGAGTACTTCTTGAGTGGGA
TCCTCAACCCGGTCAAGAGAAACCCCCGGTGCCAATGTTGAAGGATGCGTTTGGT

Homology of Contig U35_27691 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g54500.1	692	6e-115	protein\|POLGAMMA2, putative, expressed
Brachypodium v1_2	Bradi5g23367.1	1032	9e-115
Arabidopsis v10	AT1G50840.1	1050	2e-92	\| Symbols: POLGAMMA2 \| polymerase gamma 2 \| chr1:18839277-18844313 FORWARD LENGTH=1050