barSeed - Barley Seed Development Database

Probe CUST_1414_PI390587928

Source Contig U35_30033

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1414_PI390587928	Hv_44K_v2	GACCTCATATGAAGTTTCCGTTGATGTAAAGTTGAATATTGTGCCATGTTGGATATTGTT	180	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.380	1.274	1.508	0.971	0.199	0.333
Raw	69.624	103.527	106.094	103.271	7.260	14.293

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60435.3	3624	7e-23	45 - 104	98	59 / 60	minus	ABC14922 ABC29684 ABC45569
MLOC	MLOC_60435.4	2272	7e-23	39 - 98	98	59 / 60	minus	ABC29684
MLOC	MLOC_60435.5	2013	7e-23	39 - 98	98	59 / 60	minus	ABC29684 ABC45569
MLOC	MLOC_60434.1	2568	7e-23	46 - 105	98	59 / 60	minus	ABC14922 ABC29684 ABC45569
MLOC	MLOC_60435.1	2053	7e-23	46 - 105	98	59 / 60	minus	ABC29684 ABC45569
MLOC	MLOC_60435.2	3031	7e-23	45 - 104	98	59 / 60	minus	ABC29684 ABC45569
MLOC	MLOC_60435.6	2917	7e-23	31 - 90	98	59 / 60	minus	ABC29684 ABC45569
JLOC1	JLOC1_39408.16	2741	4e-23	2639 - 2698	98	59 / 60	plus
JLOC1	JLOC1_39408.15	2486	4e-23	2384 - 2443	98	59 / 60	plus
JLOC1	JLOC1_39408.14	2010	4e-23	1908 - 1967	98	59 / 60	plus
JLOC1	JLOC1_39408.13	1108	4e-23	1006 - 1065	98	59 / 60	plus
JLOC1	JLOC1_39408.12	2112	4e-23	2010 - 2069	98	59 / 60	plus
JLOC1	JLOC1_39408.11	2643	4e-23	2541 - 2600	98	59 / 60	plus
JLOC1	JLOC1_39408.10	1807	4e-23	1705 - 1764	98	59 / 60	plus
JLOC1	JLOC1_39408.9	1046	4e-23	944 - 1003	98	59 / 60	plus
JLOC1	JLOC1_39408.8	2490	4e-23	2388 - 2447	98	59 / 60	plus
JLOC1	JLOC1_39408.7	1788	4e-23	1686 - 1745	98	59 / 60	plus
JLOC1	JLOC1_39408.6	2790	4e-23	2688 - 2747	98	59 / 60	plus
JLOC1	JLOC1_39408.5	1143	4e-23	1041 - 1100	98	59 / 60	plus
JLOC1	JLOC1_39408.4	1791	4e-23	1689 - 1748	98	59 / 60	plus
JLOC1	JLOC1_39408.3	3388	4e-23	3286 - 3345	98	59 / 60	plus
JLOC1	JLOC1_39408.2	2795	4e-23	2693 - 2752	98	59 / 60	plus
JLOC1	JLOC1_39408.1	1948	4e-23	1846 - 1905	98	59 / 60	plus
Harvest21	ABC29684	301	3e-25	181 - 240	100	60 / 60	plus	ABC29684
Harvest35	U35_30033	301	3e-25	181 - 240	100	60 / 60	plus

Contig Sequence (301 bp)

>U35_30033 301 Hv_44K_v2
GGCTCTATGTGGACCAAGTGGTTAGAAGGGAGACGACGCACACAAATATTTTGAAGAGAA
AGCAAGTTTATTTTGTGTGCTACTTTGTAAGAATGTGTGCCATGCTAGTTTTTGTCTGCA
ACTGTCTTCGAGTATTTAGCAGCTTGAAAGCTTTATGTTGGGTATATTGTAAGTTTAGGG
GACCTCATATGAAGTTTCCGTTGATGTAAAGTTGAATATTGTGCCATGTTGGATATTGTT
AAATGAATTGATATGAAAACAGGAAAAAAAAAAAAAAAGGGCGGCCGCCCTTTTTTTTTT
T

Homology of Contig U35_30033 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None