barSeed - Barley Seed Development Database

Probe CUST_14143_PI390587928

Source Contig U35_50020

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14143_PI390587928	Hv_44K_v2	GAGACAAAGCACATCTCAGATTTGTCTGTTAAAAAATACGCTGATTCGTTGTCATTTTTC	540	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.017	0.816	0.816	0.675	1.302	1.159
Raw	3.830	4.236	4.659	5.066	2.869	2.810

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37733.2	2072	2e-24	453 - 512	100	60 / 60	plus	ABC02198
Harvest21	ABC52014	633	3e-25	541 - 600	100	60 / 60	plus
Harvest35	U35_50020	633	3e-25	541 - 600	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_50020 633 Hv_44K_v2
TACAAAATAAGGAGAATGAGTTAGTGCAGAGCAGTCGAAACGAGTACCTCAAACTGAAAG
CACGAGTGGAGAATTTGCAGAGAACTCAACGAAATTTGCTTGGCGAAGATCTCGGGTCAC
TTGGCATCAAAGATCTTGAGCAGCTCGAAAAGCAACTTGATTCATCCTTGAGGCACATAA
GATCCACAAGGGTAATTGATTATCTTTCATATGATCACGATGCATAGGCTAGGAGAATTA
TCTCTTTTCGTTATCTACATAAGAAGTACAGATTGTTTAGTAGACTTTTCATTTTGTCCT
GTAGCTGTGGCCTGTGGGATTTTCAATTTCTATCGTCTGTTGCTACTTGCTACTCTGTGT
TAGATGATCATTGCTATATAATGCTACTAGGTGTATGGTCTGGTACGCTAGCGTCTTGTA
GTGCTTCAGTTTTAATTAAGTAAATGGAGCAGGGTGTGGCCTGCTCAAACAATAATGGAA
AATATTGTTTTTCCTCGTGCTGCAAAATATAGATCCAAAGTATATTTTTTTTTCTCAAAG
GAGACAAAGCACATCTCAGATTTGTCTGTTAAAAAATACGCTGATTCGTTGTCATTTTTC
TAGGAATGGAAATATATACATTCAGGGGAATTT

Homology of Contig U35_50020 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None