- Probe CUST_14142_PI390587928
- Source Contig U35_50021
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14142_PI390587928 | Hv_44K_v2 | ATTTGGAATGCAAAGGTACTTCTGATGAGCGGTATGAGCAATGGTGCCTTTGCTGACATA | 497 | GeneList: ivory MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.174 | 1.114 | 1.927 | 1.377 | 0.849 | 0.618 |
| Raw | 153.219 | 214.643 | 338.922 | 360.440 | 81.347 | 66.492 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_75016.4 | 3324 | 2e-24 | 2181 - 2240 | 100 | 60 / 60 | minus | ABC12137 ABC28939 |
| MLOC | MLOC_75016.2 | 4083 | 2e-24 | 2132 - 2191 | 100 | 60 / 60 | minus | ABC12137 ABC28939 |
| MLOC | MLOC_75016.3 | 4309 | 2e-24 | 2188 - 2247 | 100 | 60 / 60 | minus | ABC12137 ABC28939 |
| MLOC | MLOC_75016.5 | 3070 | 2e-24 | 1609 - 1668 | 100 | 60 / 60 | minus | ABC28939 |
| MLOC | MLOC_75016.1 | 3979 | 2e-24 | 2132 - 2191 | 100 | 60 / 60 | minus | ABC12137 ABC28939 |
| JLOC1 | JLOC1_50019.6 | 2755 | 8e-25 | 556 - 615 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50019.5 | 4013 | 8e-25 | 1812 - 1871 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50019.4 | 3166 | 8e-25 | 965 - 1024 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50019.3 | 3932 | 8e-25 | 1731 - 1790 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50019.2 | 4032 | 8e-25 | 1833 - 1892 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50019.1 | 4011 | 8e-25 | 1812 - 1871 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52015 | 592 | 3e-25 | 498 - 557 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50021 | 592 | 3e-25 | 498 - 557 | 100 | 60 / 60 | plus |
Contig Sequence (592 bp)
>U35_50021 592 Hv_44K_v2 AAAGGGAGCGGGAGCGTCAAAGGGAACATGAAAGAGAACGTCTTCGCGAGCGCCGCGAGA AGGAGAGGGAGCGGAACAAGAAGCATGTAGCTGATTCAAGGCGTGAGCGCACTCCACCTA GAACCCCTGGTGATCGACGACGTTCTTCTTCTGTTAAGTCTGAGAAGCCTTTGCGGCGCC TTTCACCTCGACGTGATGCTGTGCATAGGCATCGTTCGCCTATTAAAGAAATAAAGAGAG AATATTTGTGCAAGGTTTTGCCATTTCGTTTTGTGGATGATGAGAGAGACTGTTTATCTT TGACAAAAAGATATCCTAGGCTATCAGTTATTCCAGATTTTTCTAAGATTGTCTTGAATT GGGCTAAAGAAAGCCTAAATCTTTCGCTGCATACACCAGTGAGTCTGGAGCATGCCATCT GTGAAGATGACGATAAAGCTGATGAAAGCGCACTGGTCTCTTCTGAGAACGCATCAAGCA CAAAGACCCCTGANACCATTTGGAATGCAAAGGTACTTCTGATGAGCGGTATGAGCAATG GTGCCTTTGCTGACATAACGTCGATGAGAAGTACTGAGGAACGAGTGGTGCA
Homology of Contig U35_50021 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g37780.1 | 1376 | 3e-79 | |
| Arabidopsis v10 | None |