barSeed - Barley Seed Development Database

Probe CUST_14140_PI390587928

Source Contig U35_50024

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14140_PI390587928	Hv_44K_v2	AAGCAACTATACCCGAAGTTAATGGACCTTGTCGATGGCATGGCAAACATGTGGAGTTCT	517	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.629	0.823	2.064	2.212	1.087	0.836
Raw	42.590	84.431	193.393	322.763	58.022	47.926

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363508	2764	2e-24	1702 - 1761	100	60 / 60	plus	ABC15830
Harvest21	ABC52019	671	3e-25	518 - 577	100	60 / 60	plus
Harvest35	U35_50024	671	3e-25	518 - 577	100	60 / 60	plus

Contig Sequence (671 bp)

>U35_50024 671 Hv_44K_v2
AGGGAAGATTATGATGGTGTCTGCCAGCTTACTGCAGATTATTGCTCAGCTTGATGATAA
CTTTCTCAGGTCTTCGGAGAGTGCACATGATGTGTCAAAAAAGCTTGAGGCCACAAGGAT
GCATTACCATTCCAACCATGCTGACAGTCGAGGACATATAGATCATTCTACGAAAATCAT
GCATGTTATCACATGGAACCGCTCCTTCAAGAATTTACCGGACCAAGAGGATTTAGGTGT
TAATTTTGAGATTGATGAACGATTTGAAACTCATGCCACAGTTCTCGACCGGATGCTTGC
CTGGGAGAAAAAATTGTATGATGAAGTGAAGGCAGGGGAACTTATGAAAATTGATTATCA
GAAGAAGGTTGATCTATTGCATAAACAAAAGAAACGTGGTGTTAAACTTGAAACTCTTGA
GAAGACAAAGGCCGCCGTTAGCCACTTGCACACAAGGTACATAGTGGATATGCAATCCAT
GGATTCAACAGTTTCGGAAATAAATCGTCTACGCGATAAGCAACTATACCCGAAGTTAAT
GGACCTTGTCGATGGCATGGCAAACATGTGGAGTTCTATGCACCGTCAACACAAGAGCCA
GTTTTTGATCATATCGGGGATCAGAGCTTTTGAGGTACCGCCTGTTCCAAGGGAGACAAC
TGATTTGCATT

Homology of Contig U35_50024 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g31580.1	798	5e-137	protein\|BZIP protein, putative, expressed
Brachypodium v1_2	Bradi2g13567.1	797	7e-140
Arabidopsis v10	AT1G52320.2	798	8e-87	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT5G25590.1); Has 8725 Blast hits to 7476 proteins in 620 species: Archae - 10; Bacteria - 622; Metazoa - 3286; Fungi - 1319; Plants - 1442; Viruses - 221; Other Eukaryotes - 1825 (source: NCBI BLink). \| chr1:19484421-19487204 FORWARD LENGTH=798