barSeed - Barley Seed Development Database

Probe CUST_14133_PI390587928

Source Contig U35_50033

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14133_PI390587928	Hv_44K_v2	GGTCCAGCTTCTCCGTCTCTCTATGGTCCAACAATACCAGTTCTAGCATAGTCGCCGGCG	243	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.701	2.133	1.293	0.608	0.331	0.420
Raw	86.550	104.536	56.495	43.091	7.493	11.492

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367675	1330	2e-24	321 - 380	100	60 / 60	plus	ABC17359
MLOC	MLOC_7908.2	1233	2e-24	506 - 565	100	60 / 60	minus	None
MLOC	MLOC_7908.1	1790	2e-24	270 - 329	100	60 / 60	minus	ABC01556
JLOC1	JLOC1_5234.2	1049	8e-25	483 - 542	100	60 / 60	plus
JLOC1	JLOC1_5234.1	808	8e-25	483 - 542	100	60 / 60	plus
Harvest21	ABC52032	303	3e-25	244 - 303	100	60 / 60	plus
Harvest35	U35_50033	303	3e-25	244 - 303	100	60 / 60	plus

Contig Sequence (303 bp)

>U35_50033 303 Hv_44K_v2
GCGGCGGCGGCGGCTTCGGTCCGAGGGAAGATCCCATTCTACTCGCCGGCGTCTGCGGCC
GTATAATGGCAGCAGTCGTGAGCTGGTACGGGCCGCTGATCGACCTGTCGGCGGCCGCCG
GCCATGTGGGTGGATTCGTGCAGCTCCTGGCGTCCGTTCGCCGTGTCCTTCCCCACCAGG
AACAAAATGCCGCAACCGGAAGGACGTATCAGAGAGTTATTCTAGAGGTTGGTGACGAGA
CGAGGTCCAGCTTCTCCGTCTCTCTATGGTCCAACAATACCAGTTCTAGCATAGTCGCCG
GCG

Homology of Contig U35_50033 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None