barSeed - Barley Seed Development Database

Probe CUST_14002_PI390587928

Source Contig U35_13711

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14002_PI390587928	Hv_44K_v2	TGTGTAGCAGCAGCTTGGTGACCCGTGAATAAGTGAGCCCTGGATTTGGTCTATAAAAAA	946	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.810	1.767	1.009	0.914	0.388	0.443
Raw	8071.323	12066.353	6121.567	8384.520	1336.730	1633.033

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC01048	1018	1e-23	947 - 1007	98	60 / 61	plus	ABC01048
Harvest35	U35_13711	1017	3e-25	947 - 1006	100	60 / 60	plus

Contig Sequence (1017 bp)

>U35_13711 1017 Hv_44K_v2
GACCCAATCCCCGTCCGATCTCGCCGGAAAATCTCCTCCGACCGATCGAAGCCAAGGCTC
TCTCGTCCTCCTCCTCAAGATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACCATCAC
CCTTGAGGTCGAGTCTTCTGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGA
GGGCATCCCGCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGGCG
CACTCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCAGGCTCCG
TGGTGGTATGCAGATCTTCGTGAAGACACTCACCGGCAAGACCATCACCTTGGAGGTTGA
GTCCTCGGACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCC
GGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCGGA
TTACAACATCCAGAAGGAATCCACCCTCCACTTGGTGCTCAGGCTCCGTGGTGGTATGCA
GATTTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTGGAGGTTGAGTCTTCTGACAC
CATTGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGCG
CTTGATCTTCGCCGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGACTACAACATCCA
GAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGTGGTGGCCAGTAAGTGCCTGGCCA
TGGAGCTGCTTCTGTGTGTGGGTTCACAAGTCTCGAATTCTCATTGCCTTCGGTCTCCTC
CTCCAGTGGAGTTGTCAGTGTGTTGTGTCTATCGTTGCAGTGTCTTTGTTCCTACATTAC
GGTGATCTAGTGTTATTTGAGTTTTGTATCTGCAAACTAAAGCTGTTGTGTAGCAGCAGC
TTGGTGACCCGTGAATAAGTGAGCCCTGGATTTGGTCTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_13711 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46770.6	306	2e-156	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi3g04730.2	230	2e-157
Arabidopsis v10	AT4G05050.1	229	1e-156	\| Symbols: UBQ11 \| ubiquitin 11 \| chr4:2588271-2588960 REVERSE LENGTH=229