barSeed - Barley Seed Development Database

Probe CUST_13983_PI390587928

Source Contig U35_10303

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13983_PI390587928	Hv_44K_v2	AAATTCTGTGACAACTGCAATAAGGGACAGCATCAGGGATACTGCAATTGGGAAAACAAG	477	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.649	1.536	1.116	0.810	0.664	0.643
Raw	383.188	466.942	346.344	351.589	117.259	121.362

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250804.1	2308	2e-24	486 - 545	100	60 / 60	plus	ABC13525
MLOC	AK356528	2129	2e-24	527 - 586	100	60 / 60	plus	ABC13525
MLOC	MLOC_52349.1	738	2e-24	138 - 197	100	60 / 60	minus	None
MLOC	MLOC_52349.2	771	2e-24	132 - 191	100	60 / 60	minus	None
JLOC1	JLOC1_33538.1	776	8e-25	581 - 640	100	60 / 60	plus
Harvest21	ABC20704	578	3e-25	478 - 537	100	60 / 60	plus
Harvest35	U35_10303	578	3e-25	478 - 537	100	60 / 60	plus

Contig Sequence (578 bp)

>U35_10303 578 Hv_44K_v2
GCTCGATTTTTCGCTGCTCCCGCAGAAGCGCATAGCCATGGCCACCGCCGCCGCCGCCGC
CACAGTCGCCTCACCGCTGCACGACCCCCGAACCTTCGCCCTGCAGCAGGGCGAATCGGA
TGGGCGCTTTGCGGATGCCGAAGAGAAACCAGCACCACCATCCGAGGCGCCCGCGGAGGC
GGAGGAGGAGGAGGAGGACGACGACGAGGAGGACGATGACGAGGAGTATTGGTCCTACCA
TGACGTGGGTGAAGCCCTAGACTGGCTCGACGCCGCGGAGGGCCCGGATGGCTCGACGCG
TCTTTCCTCAACATTCTCGGCCGCCGGAAGCGCCGCTGCGGCGCGGAGGCCGAACGCGCA
CGGCGGCATGCTCGCACGCACACTCCAGCCACTCTCCAACCGCACACAGAAGCTCGCCTC
GCACGTCCGCGCCGCTCCGTTGGAGGAGTGGGAAGGTAGAATGAACGTGGGGATGTCAAA
TTCTGTGACAACTGCAATAAGGGACAGCATCAGGGATACTGCAATTGGGAAAACAAGGAA
CACCGGGAAGGCAGATCGTGCTACAGTTGAACAGGCTA

Homology of Contig U35_10303 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g06820.1	570	4e-51	protein\|serine/threonine-protein kinase RIO-like, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None