barSeed - Barley Seed Development Database

Probe CUST_13937_PI390587928

Source Contig U35_22313

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13937_PI390587928	Hv_44K_v2	GTATGTATGTTGGTAGGTTTATGCAATTGTACTCCCTCCGTAACAAAATATAAGTCGTTT	915	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.286	1.523	1.038	0.903	0.421	0.397
Raw	356.694	652.325	391.095	523.884	88.074	90.004

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6823.3	2324	2e-24	1221 - 1280	100	60 / 60	plus	ABC16122
MLOC	MLOC_6823.8	2393	2e-24	964 - 1023	100	60 / 60	plus	ABC16122
MLOC	MLOC_6823.5	2395	2e-24	1140 - 1199	100	60 / 60	plus	ABC16122
JLOC1	JLOC1_4466.1	2661	8e-25	1149 - 1208	100	60 / 60	plus
Harvest21	ABC16122	983	3e-25	916 - 975	100	60 / 60	plus	ABC16122
Harvest35	U35_22313	983	3e-25	916 - 975	100	60 / 60	plus

Contig Sequence (983 bp)

>U35_22313 983 Hv_44K_v2
CGATCTGCCTAATAACTATGCGGAGACAAATGCTTCATTTAGTTCAGACGAGCAACTCAT
TTTTACAGGAACCTCTGTTGAGAAAGATGGCAGAAATGGAGGCCTACTTTGCTTCTTTGA
TAGAAGGAAACTAGAGCTTGTATCAAGGGTGGGAATTTCACCACATTACAGCGTGATAAG
GTCGCTCTGGCATCCAAGGATTAATCAGGTGTTCGCAACAGTTGGGGACAAGAAGGAAGG
TGGGACTCATATCTTGTACGATCCTTCTGTTAGTCAGAGGGGAGCTCTTGTGTGTGTTGG
ACGAGCACCAAGGAAACAATCTGTTGATGATTATGAGGTGCAACCTTTAATACACAATCC
ACATGCACTGCCTCTATTCAGAGATCAACCAAGCCGTAAACGCCAAAGAGAGAAGATGAT
GAAAGACCCCCTCAAATCACACAAACCAGAAGCACCTGTTAGTGGTCCAGGGTTTGGTGG
TAAAATTGGCACGACAAAAGGCAGCTTGCTGACACAGTATCTCATGAAGGAGGGTGGTTT
AATTAAGGAGACATGGATGGATGAAGATCCAAGAGAAGCAATTTTGAAATATGCGGATGC
TGCAAAGAATGACCCAAAGTTTATTGCGCCAGCATATGCTCAAACTCAGCCGGAAACAGT
CTTCGCAGAGTCTGATTCCGACGGTGAAGAGAAAAAATAACATGTGGATGTAAGCTGTTT
TGTTTTATTTTAGTAAAATGAGATTTGACACAAGAATGTTCTGTTTTCTGACAGAGTGAA
TCTAACGCAGTGACCATCAAGTTTCTTGCATGAGTCCTGCAACATGTACTTTTACTGAGG
AGAAACTATAGAATGCGGTAAGTGTCGAATACGATGGTACCCCAGCATGTCTTCTCAGTT
CCGAGTGTTATATCTGTATGTATGTTGGTAGGTTTATGCAATTGTACTCCCTCCGTAACA
AAATATAAGTCGTTTTTTAAAAA

Homology of Contig U35_22313 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g32710.2	647	6e-151	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi3g28150.1	629	5e-155
Arabidopsis v10	AT2G20330.1	648	3e-119	Transducin/WD40 repeat-like superfamily protein \| chr2:8772888-8775518 REVERSE LENGTH=648