barSeed - Barley Seed Development Database

Probe CUST_13924_PI390587928

Source Contig U35_10348

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13924_PI390587928	Hv_44K_v2	TCTTGGTCGTCGTCTCCCACTTTCGTCGTCTTCTTGATCTGAGCTGAGAAGCGGCGAGGA	84	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69748.1	2752	2e-24	423 - 482	100	60 / 60	plus	ABC14331 ABC43234
JLOC1	JLOC1_46238.1	1506	8e-25	247 - 306	100	60 / 60	plus
Harvest21	ABC20002	513	3e-25	85 - 144	100	60 / 60	plus
Harvest35	U35_10348	514	3e-25	85 - 144	100	60 / 60	plus

Contig Sequence (514 bp)

>U35_10348 514 Hv_44K_v2
CTCTCGCCTCCTCTCCTCACGAGCAGCTCACTCAACTCCATCGTGCCGGCTGCTCGAGCA
GCTGGCGTTCCTCTTTGCTTGCCTTCTTGGTCGTCGTCTCCCACTTTCGTCGTCTTCTTG
ATCTGAGCTGAGAAGCGGCGAGGAGGCAAGCCGGCCGGCCGGCGGCGATGGACATGTCTG
GCGTGAGCGCGGTGGACAGCCCGGGAGGCGGCAGCGCATCGTCGGCGGTGGCAGCGCCGC
GGCCGAGCAGGTACGAGTCGCAGAAGCGGCGGGACTGGCAGACGTTCGGGCAGTACCTAC
GGAACCACCGCCCCCCGCTGGAGCTGGCGCGGTGCAGCGGCGCGCACGTGCTGGAGTTCC
TCCGGTACCTGGACCAGTTCGGCAAGACCAAGGTGCACGCCGCGGGGGTGCCCCTTTTTC
GGCCACCCCTCGCCGCCGGCGCCGTGCCCATGCCCGCTGAAGCAGGCATGGGGTTCCCTG
GACGCTCTCGTGGGCCGCCTCCGCGCCGCCTTTG

Homology of Contig U35_10348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None