barSeed - Barley Seed Development Database

Probe CUST_13908_PI390587928

Source Contig U35_10353

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13908_PI390587928	Hv_44K_v2	TGAACCTGCAGTTTTCCATAGCCTTAACTGAAGCATGTTCAGGTTACATACAGTGCTAAA	700	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.174	1.486	1.258	0.908	0.435	0.503
Raw	165.411	330.586	241.628	275.769	45.310	57.462

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74791.1	1639	2e-23	1512 - 1569	100	58 / 58	plus	None
MLOC	AK375567	2414	9e-22	2242 - 2299	98	57 / 58	plus	ABC05171 ABC30943
JLOC1	JLOC1_49860.1	1643	1e-23	1514 - 1571	100	58 / 58	plus
Harvest35	U35_10353	774	3e-25	701 - 760	100	60 / 60	plus

Contig Sequence (774 bp)

>U35_10353 774 Hv_44K_v2
GCCACCGAAGAATGCAACTCCTGAAGCTCTGAGAAAGAGATCTCTGACGAAGGTCTACCC
GCTGGACATGGACGACGATGCCCAGGGCCTGCTGCTCTCGGAGCTGCCCAGCGTGGAGCT
GGAGCAGGAGATGGGGGCCGCCTACGAGGAGCTGTTCGGGGACATGAACCCCGACGACTT
CCTCGGCTTTGACCTCGGGATGATGGACGTGGACGACGGGTCCGGCGGGATGACGCCTCC
GCTCAAGCTCTGGGACGACCTGGACCTGGAGGAAGGTGAGATCCCCTCGCAGCCGTGAAG
AAGAAACCTGGGTGCTTGGAACTCGACGTGAGAGCTTGGAATTTGCTTGTCCAGGAGTGT
TTCTGGAGATCTGTTGGCTGTAGCACCACCTGAGAGTTGTCGGGTGCTATTTATTCTTTG
TTAATTTTCCTCTGGTCCCCGTTGCCGGGGCGGCGTCGGGGTGCGTTTCGAGGTTGAGCT
TGTTTGCCCCTCGTAGCTGCAGAAACTTTGAGGTTGTGACTCTGCAACTGCAAAGCTCGT
GAGTAGAGCAGTCCTGAAGTGAAGCCGGTGGGCGTGTAATATCGATCGATGAGAGTTGTG
TGTAAAATGTGGAATCGCAAAAGCTGTGATGTTATCTATGGACGCATCATCAATCTGTTG
CTGATCATAGAGAGATATTTTGTTGTTTTTTCACCATTGCTGAACCTGCAGTTTTCCATA
GCCTTAACTGAAGCATGTTCAGGTTACATACAGTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_10353 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None