- Probe CUST_1386_PI390587928
- Source Contig U35_42023
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1386_PI390587928 | Hv_44K_v2 | TGTTTGATGTCACTTCAAGGCTGACCTACAAGAATGTTCCTACATGGCACAGGGACTTGT | 439 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.352 | 0.528 | 1.280 | 1.629 | 0.996 | 1.030 |
| Raw | 4773.813 | 11031.310 | 23640.167 | 47956.100 | 10074.560 | 11454.563 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_19772.1 | 1306 | 2e-24 | 691 - 750 | 100 | 60 / 60 | minus | ABC01812 ABC01813 ABC11318 |
| MLOC | MLOC_19772.2 | 1551 | 2e-24 | 936 - 995 | 100 | 60 / 60 | minus | ABC01812 ABC01813 ABC11318 ABC34623 |
| JLOC1 | JLOC1_13697.2 | 1669 | 8e-25 | 569 - 628 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_13697.1 | 1266 | 8e-25 | 411 - 470 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC46200 | 418 | 3e-25 | 327 - 386 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37370 | 588 | 3e-25 | 440 - 499 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01813 | 1043 | 3e-25 | 358 - 417 | 100 | 60 / 60 | plus | ABC01813 |
| Harvest21 | ABC01812 | 1502 | 3e-25 | 357 - 416 | 100 | 60 / 60 | plus | ABC01812 |
| Harvest35 | U35_42023 | 588 | 3e-25 | 440 - 499 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14667 | 1511 | 3e-25 | 371 - 430 | 100 | 60 / 60 | plus |
Contig Sequence (588 bp)
>U35_42023 588 Hv_44K_v2 GCCAGCTAGGGTTTTGCTGCCTCCCTCCCGTGCCGCCGCCTCTCAACCGCGGCCCCCCCA TGGTGAGTTAATCCCGTCCGATCCCGCACGCTCGTCCTCCGTTTGATTCCGCGTCGGATC CGCGGCCGGGCAGAGGTCTGATCTGGTTTCGTTTTGGCTTTCTCGCAGGCGCTGCCGAAC CAGAACACCGTCGATTACCCCAGCTTCAAGCTCGTCATCGTCGGCGACGGAGGGACTGGC AAAACCACTTTTGTGAAGAGGCATCTCACTGGAGAGTTTGAGAAGAAATATGAACCCACC ATTGGTGTTGAAGTTCACCCATTGGATTTCACCACTAACTGTGGAAAGATCCGATTCTAC TGCTGGGACACTGCTGGGCAAGAGAAGTTTGGTGGACTTAGGGATGGATACTATATCCAT GGTCAGTGTGCGATAATCATGTTTGATGTCACTTCAAGGCTGACCTACAAGAATGTTCCT ACATGGCACAGGGACTTGTGCAGGGTGTGTGAGAACATTCCCATTGTCCTGTGCGGGAAC AAGGTTGATGTGAAGAACAGGCAGGTTAAGGCCAAGCAGGTGACATTC
Homology of Contig U35_42023 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g49890.2 | 200 | 9e-103 | protein|ras-related protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g15730.2 | 174 | 2e-103 | |
| Arabidopsis v10 | AT5G20010.1 | 221 | 2e-101 | | Symbols: RAN-1, RAN1, ATRAN1 | RAS-related nuclear protein-1 | chr5:6760364-6761747 FORWARD LENGTH=221 |