barSeed - Barley Seed Development Database

Probe CUST_1385_PI390587928

Source Contig U35_42024

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1385_PI390587928	Hv_44K_v2	TGATCAGGCCATATGTGTGTCTCACACAAGCAAAGAGAACACTGTCTTGAGATCAGGGAT	511	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368062	1872	2e-24	603 - 662	100	60 / 60	plus	ABC08470 ABC08472 ABC37012
MLOC	MLOC_67626.3	1107	2e-24	809 - 868	100	60 / 60	minus	ABC08470 ABC08472 ABC37012
MLOC	MLOC_67626.2	1481	2e-24	1169 - 1228	100	60 / 60	minus	ABC08470 ABC08472 ABC37012
MLOC	MLOC_67626.1	1602	2e-24	1211 - 1270	100	60 / 60	minus	ABC08470 ABC08472 ABC37012
MLOC	AK251772.1	1834	7e-23	656 - 715	98	59 / 60	plus	ABC08470 ABC08472 ABC37012
JLOC1	JLOC1_44670.2	1648	8e-25	241 - 300	100	60 / 60	plus
JLOC1	JLOC1_44670.1	1617	8e-25	241 - 300	100	60 / 60	plus
Harvest21	ABC37371	574	3e-25	512 - 571	100	60 / 60	plus
Harvest21	ABC08470	1793	1e-23	636 - 695	98	59 / 60	plus	ABC08470
Harvest35	U35_42024	574	3e-25	512 - 571	100	60 / 60	plus
Harvest35	U35_17951	1793	1e-23	636 - 695	98	59 / 60	plus

Contig Sequence (574 bp)

>U35_42024 574 Hv_44K_v2
GCCCATCCAAGCTCCTGTCCGCTCCGGCTCCGGTGACGGCGACGGGCCGGCGGTTGCTTT
CGTCCTCCTTCGTCGACCAAGATCCACCAACGCAAACACCGCATCCTCCTCTTCTTTCAG
ATCTCACACGCAATGGATGGGCAAAGCAGAAAGCACAGGATTTTGATGGTGTCCGACTTT
TTCTTCCCAAACTTTGGCGGTGTGGAAAGCCACATCTATTATCTATCGCAATGCCTCCTT
AAGCTTGGTCATAAGGTGGTTGTCATGACACATGCATATGGAAAACGTTCTGGAGTACGA
TATGTTACTGGTGGCTTGAAGGTTTATTATGTGCCGTGGAGGCCATTCCTGATGCAGAAT
ACGCTACCTACATTATTCATGACATTTCCAATCATAAGGACCATTCTTATTCGTGAGAGG
ATATCTGTTGTGCATGGACATCAGGCCTTTTCAACACTGTGCCACGAAGCGTTGATGCAT
GCTAGGACGATGGGTTTACTCTTGCAGATATTGATCAGGCCATATGTGTGTCTCACACAA
GCAAAGAGAACACTGTCTTGAGATCAGGGATATC

Homology of Contig U35_42024 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g16960.1	472	2e-78	protein\|glycosyl transferase, group 1 domain containing protein, expressed
Brachypodium v1_2	Bradi1g32610.1	449	1e-78
Arabidopsis v10	AT3G45100.1	447	7e-67	\| Symbols: SETH2 \| UDP-Glycosyltransferase superfamily protein \| chr3:16504648-16506858 FORWARD LENGTH=447