barSeed - Barley Seed Development Database

Probe CUST_13856_PI390587928

Source Contig U35_1265

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13856_PI390587928	Hv_44K_v2	TTTGCACACCTTCAATGTAGATGACAAGAGAGATCAATATATTGTCCATGAAAGGATTAC	630	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58105.1	6608	2e-24	3115 - 3174	100	60 / 60	minus	ABC00642 ABC03659 ABC09936
MLOC	MLOC_58105.2	5572	2e-24	1340 - 1399	100	60 / 60	minus	ABC00642 ABC03659 ABC09936
JLOC1	JLOC1_37720.1	5225	8e-25	3385 - 3444	100	60 / 60	plus
JLOC1	JLOC1_37719.1	3102	8e-25	1393 - 1452	100	60 / 60	minus
Harvest35	U35_1265	713	3e-25	631 - 690	100	60 / 60	plus

Contig Sequence (713 bp)

>U35_1265 713 Hv_44K_v2
GCTCGTCCGCAGACAAGAAGTCGTCTCGCCTAACCGCTGAAGGCCTGATTGGATCGTACA
TCCACGACAACCGCATAGGATGCATGATTGAAATCAACTCTGAGACCGACTTCGTGGCTC
GCAATGAGAAATTCAAGGAGCTGGTGAATGACCTCGCAATGCAAGTGGTGGCATGCCCGC
AGGTCGAATATGTCTCAATGGACGACATACCAGAGAGTATTGTCAGCAAGGAGAAGGAGA
TTGAGATGCAGAGGGAGGACCTGCAGTCAAAACCCGAGAACATCAGGGAGAAGATCGTGG
AAGGGCGGATATCGAAGAGGCTCGGCGTGATGGCCCTCCTGGAGCAGCCCTTCATCAAGG
ATGACAGCAAGACGGTGAAGGATCTCGTGAAGGAGACGATCGCTGGTCTGGGGGAGAACA
TCAAGGTACGGAGGTTTGTCAGGTATACCCTCGGCGAAAACTGATAAATGAGACAGTGAC
CTCCGTCACAATCCCTGACATCAGGAGTTGGGCACATTTTGATTCATCATGATGCATAGC
TGTTGCTAGTTTGTACTCAGTTGTACTCGGTTCCATGTATAATTTTGTATCACCTGTTAC
TATCGTTCCTGGTTCCAAACCACACGCTTTTTTGCACACCTTCAATGTAGATGACAAGAG
AGATCAATATATTGTCCATGAAAGGATTACGGCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1265 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g35630.1	1124	3e-88	protein\|elongation factor TS family protein, expressed
Brachypodium v1_2	Bradi3g05950.1	963	3e-91
Arabidopsis v10	AT4G29060.1	953	2e-72	\| Symbols: emb2726 \| elongation factor Ts family protein \| chr4:14317744-14321315 FORWARD LENGTH=953