barSeed - Barley Seed Development Database

Probe CUST_1381_PI390587928

Source Contig U35_42029

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1381_PI390587928	Hv_44K_v2	CAATAAGGTCGCCGCCGTGTACGACGACCTCTGCTACGTTGGCTTCTCCAACAAGAACAT	353	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363696	2591	2e-24	422 - 481	100	60 / 60	plus	ABC06958 ABC49629
Harvest21	ABC37378	492	3e-25	354 - 413	100	60 / 60	plus
Harvest35	U35_42029	492	3e-25	354 - 413	100	60 / 60	plus

Contig Sequence (492 bp)

>U35_42029 492 Hv_44K_v2
GCCATAGCCTCGCACCACCGCGACCGCATCCCCTCCTACCTCGCCACCGCCGCTGCCCTC
CTCCTTGCCTTCCTCCTCCCGCCGCTGGCATCTTCCCAATCCCAGTGGCAGAACTGCGAC
GACAAGACCAGCATGTTCACCCAGAACAGCACTTACCAGGCTAACATCCAGGCCCTCTCC
ACCACCCTTCCCAAGAACGCCTCCTCCTCGCGGACGCTCTTCGCGTTCGCCAGCGTCGGC
ACCGTTCCGGACATCGTGTACGCGCTCGCGCTCTGCCGCGGCGACGCCAACGCCTCCGCC
TGCGGCACTTGCGTCTCCAACGGCTTCAAGGGCGCGCAGCAGCTCTGCCCCTACAATAAG
GTCGCCGCCGTGTACGACGACCTCTGCTACGTTGGCTTCTCCAACAAGAACATNCTCTCC
CCCACCGGCGGCGACAACAACGCCCTCATACTGATGAACTCGCAGAACGTGACCGAGCCA
GTGAAGGAGGCG

Homology of Contig U35_42029 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g25657.1	690	5e-52
Arabidopsis v10	None