barSeed - Barley Seed Development Database

Probe CUST_13797_PI390587928

Source Contig U35_852

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13797_PI390587928	Hv_44K_v2	ATGTGAGGACACGCAATATCAAGAAATTGTCCAAGCAGTATGTTGGAAATGAATGGACCC	958	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374143	3647	2e-24	3256 - 3315	100	60 / 60	plus	ABC11670
MLOC	MLOC_5925.3	2878	2e-24	160 - 219	100	60 / 60	minus	ABC11670
MLOC	MLOC_5925.2	3091	2e-24	373 - 432	100	60 / 60	minus	ABC11670
MLOC	MLOC_5925.1	3090	2e-24	439 - 498	100	60 / 60	minus	ABC11670
JLOC1	JLOC1_3842.3	3123	8e-25	2598 - 2657	100	60 / 60	plus
JLOC1	JLOC1_3842.2	3120	8e-25	2592 - 2651	100	60 / 60	plus
JLOC1	JLOC1_3842.1	2895	8e-25	2367 - 2426	100	60 / 60	plus
Harvest21	ABC11670	1415	3e-25	959 - 1018	100	60 / 60	plus	ABC11670
Harvest35	U35_852	1408	3e-25	959 - 1018	100	60 / 60	plus

Contig Sequence (1408 bp)

>U35_852 1408 Hv_44K_v2
GATTAAAAAAGCAACGGCAAGAAACCCCGTGTACGTGTCCTCAGCAAGCGTGAGCTTATC
CAGGAGGCAAGAAAGCAGCCAAAGTTGCTGCCCGAAGGCTTTGTGCCCTTCAGCAATTTT
GTTGCCAGTTGCACGGAGCAGAACGCTGACCGACCACCTTACAGTGCATTCTTCGACCAG
TTCCGCTATAACCCTGTCTGCGAAGATCGCAGACCCCCACTTCCCAGAACCCCTGATCGT
GTGGCCAGGTTGCCACCTCGGGGTTACTCATCATTTGAGTCATCTCAGCTTGCTGCAAAT
GAGGCTTCCAGGCCTGACACCACTCTCGCGTCCAAGACAAAGCAGCAAGATTCAGGTTCA
GGATCACAAGAGAAAGTTAGTGTAGAAGTAAAGGAAAACCCTGAAAACAAGACGAGGGAG
AAGAAGCAAAGGAAACTATCTGGCAAGTCACGATTGCCATTTGACCCCAGCCAGACTTGC
TGTGTTCAGCTACAAGGAACCAAAGCTCTACCAGAAGAGGACCAAGAGACCTCCAAGGCT
TTCAAGGCTAACAATTCTGTGGAGTCCAAGTCAAAGAAGGAAGATTCAGCTTCAGGCTCC
ACCTCGGGCTCACAGAAGAAACAAATTGTAAAAGAAAAGACAACCCCTGAGAAGAAGACG
AGGATCAGCAAACGACGACCAGTGTTTACCGCTGCTGAGAAGCGCTCAGACAAATACCGG
CGCGTTCCCTTGGACCAGCTGGTATCACCGCCACGCTCTCCTCATAATCTCTTGCAGGAG
AAGTACGCTTCTGACCCGTGGAAGGTTATTCTCATCTGCGTGTTCCTCAACTTAACACAG
GGTATACAGGTCAAGAGGATGTTGGAGGGCTTCTTTGAACGCTATCCTGACCCTTTGTCT
GCAATTAACGCTGATCCTGACAAGATGGCGGAGTATCTAGCGCCTCTAGGGTTGAACAAT
GTGAGGACACGCAATATCAAGAAATTGTCCAAGCAGTATGTTGGAAATGAATGGACCCAT
GTTACGCAGCTTTGTGGCGTCGGCAAGTATGCAGCTGATGCTTATGCAATATTTTGTGCG
GGTAGGGCGAGGGAGGTGGTACCTGATGATCACAAGTTAGTTGATTACTGGAATTATGTC
TGCTTTGAGTTGCCCATGGCACAGATGGATTAGTTCAGTTCCAGTATATGTTGAGTGAAG
TGCAAGGGGAAGCAGCTGTGGATGGCGGCGCCATGCAGTCCTGGATGGGATAATTTTACA
GTGCAACTGGAGTTGGTTTTGTGTGGTTCATGTACCTTGGATACTTTGCTCCCTTAGATT
AGTGTTAAGCTTGAGATGATATTACCTGACAAAAGACAGTTGATGGATGCAACGAGTTAT
GTTTGCAGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_852 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g01290.2	442	5e-83	protein\|hhH-GPD superfamily base excision DNA repair protein, putative, expressed
Brachypodium v1_2	Bradi5g00220.3	607	1e-95
Arabidopsis v10	None