barSeed - Barley Seed Development Database

Probe CUST_13703_PI390587928

Source Contig U35_5556

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13703_PI390587928	Hv_44K_v2	GTAAAACAGTGCTGAAATCACTACGGTACATGAAGAATTTCAATGCCAAGACCTGGGAGA	690	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358082	1829	2e-24	1751 - 1810	100	60 / 60	plus	ABC13294 ABC45672
MLOC	MLOC_73216.1	1529	2e-24	1270 - 1329	100	60 / 60	plus	ABC13294 ABC45672
JLOC1	JLOC1_48739.1	1339	8e-25	1263 - 1322	100	60 / 60	plus
Harvest21	ABC13294	804	3e-25	691 - 750	100	60 / 60	plus	ABC13294
Harvest35	U35_5556	804	3e-25	691 - 750	100	60 / 60	plus

Contig Sequence (804 bp)

>U35_5556 804 Hv_44K_v2
GCTGATGTCCGACTTACCAAGCGGACCGAAGGGAGGGGGCTGGTGATCACCGGATGGGCG
CCGCAGCTGGAGATCCTGGCGCACGGCGCCACGGCCTTCTTCGTGAGCCACTGCGGCTGG
AACTCGCTACTGGAAGGCCTGAGCCACGGGAAGCCGATTCTAGCGTGGCCCATGCACTCC
GACCAGCCGTGGAACGCGGGGTACGTGTGCGGCCACCTCAAGGCCGGGATCGTCATGAGG
CCATGGGAGAAGAGCCGGGAGACGCTGCCGGCCAAGGAGATCCAAGAGGTCATCAATAGG
GCGATGGACTCTGACCAAGGCATCGCCGTGCGGAGTGCGGCGAAGGCGCTCGCCGAGGAC
GTCCGTGCCGCCGTGGCAAACGGTGGCTCGTCGTGGGCGGACATGGAAGAGTTCATCGGT
TGCATCACAAAATGAAGGATTGGCGTCGACAATAAATCAGATGACCAGGCATGGTTTATT
TTGCAGCGCCAATCAGAACATTTCTCGTGTGTGATATGAAGTGTCTCTAGTGTCTCGTTC
GTAGATTTGTTTCCTGTCTTTTTCGTTCGCTCCATTCGGATTCACGAAAAGAGTACCCTG
AAGCCCATCCGTCGCTGCAATGCAATACAGTAGCATGCAGTTGATTGGTCCGTGTGAGCA
CTGGACCCGGTTCTGTTTCAGCGTTACAGTGTAAAACAGTGCTGAAATCACTACGGTACA
TGAAGAATTTCAATGCCAAGACCTGGGAGACAGGCCTGGGATGTAGGTCCGTTACTGGTA
CATTCTACAACTGTCCCGAAACGT

Homology of Contig U35_5556 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g46980.1	464	1e-58	protein\|cis-zeatin O-glucosyltransferase, putative, expressed
Brachypodium v1_2	Bradi5g18030.1	467	3e-59
Arabidopsis v10	None