barSeed - Barley Seed Development Database

Probe CUST_13645_PI390587928

Source Contig U35_1492

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13645_PI390587928	Hv_44K_v2	TGACTTTATTATCTGGTTTACGTGGGCTTCTGGGGAGTTTGAAACCCCAAAGTTAAAAAA	2333	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76006.1	1367	9e-22	1 - 55	100	55 / 55	minus	ABC04099 ABC04101 ABC38864
Harvest21	ABC04099	2040	3e-25	1981 - 2040	100	60 / 60	plus	ABC04099
Harvest35	U35_1492	2393	3e-25	2334 - 2393	100	60 / 60	plus

Contig Sequence (2393 bp)

>U35_1492 2393 Hv_44K_v2
AAGATAGCGAGGCAGCACGTGGACAACAAGATCGCCCAAGACGTCGAGCGAAAGCAGCAG
CAGCAGCAAAGCCTCAAGATGGAAGAGAGCAACACACATTTGAGAAACCCCATGTCAGAG
AGGAACCTCAACGCCACCATGGAGATCCTGAGCATTTTTAATAGAGATCCACACGATTCA
TATTGATAATATCACACTCACAGATAAGTGGTTGTGTAATAGCAAAACAACGTAAATTTT
GGCAACAAGACAATAGTTAGCATTTTTGTTCTTTTTTATCAAGTCACTGCCAATGCATCT
TCCTCCTGTATTTGGTCAAACCTTCACGTTGTCTCTTGTTATTTCCAGCTTGAATAGGTG
CAGCTTTGACAAAGTATAGGATGGGCAGATGTCGCGAAAGGAATAATCATGGTTTTTGAA
GACTGATAATGCTCCCTCGAGTACTACACAGCAAAAAAACTCAGCTGCTGACGGGTATGC
ATTGGAGAGACTAACGCTGCTTTCTGAACTCAATCAATGTAAAGACGTTGCGAGTAAACA
AAGTTCCAAATACTTTGGCGCTGGCTGAACAACACCATTTCCACCAGACCAAGACGGTGG
TATATACATCCGAATTCGAACCAAAGAGTGCCTTAAAAGGAGGGAATTAGCAGGGCAAGG
AAAGAATAATGGAAGGGCACGGCCGGCCGGCCAGGATGGTGCTCGCGGAGCTGGGCGGGA
GCATCTCCCGCGCGCTGGCGCGGATGAGCAGCGCGACGGTGGTCGACGAGAGCGTGCTCC
GGGAGTGCCTCAACGAGATCGCGCGGGCGCTCATGCAGTCCGACGTCCGGTTCAAGACGG
TCTGCGACCTGCAGGCCAACATCAGGAAGACCGTCAACCTCGAGGCCCTCGCCGCCGGCA
CCAACAAGCGCCGCATTATAGAGACCTCCGTCGGGAAGGAGCTCTGCAAGATGCTGGATA
CCGGGAAGCCCGCCTTCGTCCCCAAGAAGGGCAAGCCCAACGTCGTCATGTTCGTCGGAT
TGCAAGGCTCTGGAAAAACAACCACCTGTACCAAGTACGCGCACTATCATCAGCGCAAGG
GATTTAAGCCGTCGCTGGTTTGCGCCGACACGTTCAGAGCCGGTGCTTTTGATCAGTTGA
AGCAGAACGCAACCAAAGCCAAGATACCCTTTTACGGAAGCTACATGGAGTCAGATCCTG
TCAAGATTGCTGTTGAGGGCCTGGAAAAGTTCAGGCAAGAGAAATCTGATCTCATTATCA
TCGACACGAGTGGGCGCCATATGCAGGAGGCTGCACTCTTCGAGGAGATGCGCCAAGTTG
CTGAAGCAACGAAACCAGACCTGGTGATATTTGTGATGGATGGCAGCATTGGTCAGGCTG
CCTTTGATCAGGCACAGGCATTCAAACAGAGTGCTTCCGTTGGTGCTGTGATTGTCACGA
AATTGGATGGTCATGCGAAGGGAGGCGGTGCACTGAGCGCGGTTGCAGCTACGAAAAGCC
CGGTGATATTCATTGGAACTGGAGAACACATTGATGATTTTGACGTTTTTAACGTGGAAC
CATTCGTCGCCCGTCTGCTAGGTAGAGGAGACTTGCCTGGCTTAATCGACAAGATGGAGA
GTATTGTGCCTGCTGATCAACAATCTGAGCTTGTGGCAAAGCTGTCTGAAGGAGCCTTCA
CTCTCAGACTTCTGTATGAGCAATTCCAGAATCTTCTGAAAATGGGACCAATGAGCCAGA
TCTTCTCCATGCTGCCTGGGTTTAGCTCGGAGTTGATGCCAAAAGGACAGGAGAAACAAA
GCAAAGAAAAGTTCAAGCGGTACATGACAATTATGGACTCCATGACACCTGCAGAGCTCG
ACAGCACGAACCCGAAGCTGATGACCGAGTCGCGAACCATCCGGGTCGCTCGAGGGTCCG
GCAGGAAACTCAAGGACGTGATGGAGATGCTGGAAGAGTACAAGCGACTAGCCAAGATGT
GGAGCAAGCTGAATGTGTCGAAATTGATACCGCCGAATGGAAAGATGAGTGCTCAGGCCA
TCCAGAAGATGCTCAAAGTCATGCCGCCACAAGTGGTGCAGCAGATGGGGGGCAAAAGTG
GCTTGGAGGCTCTCCTGAAACAATTGGGCGGAGGCAAGGACACGAGCAAAATGCTTGCTG
GCATGAGGGGTGGTGCTTAGTCTTGCAAATGTAGGTGGTGCGCTTGCTGCGTTGTAGAAT
TTCTCTCCTGACAAGAAGATACTGCAGTATATGTTTTCCTAACTCCCCATTGTACTTAAA
TTTCTCTGGAACTGACGTGTATAGACAATCAAATTCACTGAGTGTGGATTTTGTGACTTT
ATTATCTGGTTTACGTGGGCTTCTGGGGAGTTTGAAACCCCAAAGTTAAAAAA

Homology of Contig U35_1492 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g56600.1	497	protein\|signal recognition particle 54 kDa protein, putative, expressed
Brachypodium v1_2	Bradi2g20340.1	499
Arabidopsis v10	AT1G48900.1	495	Signal recognition particle, SRP54 subunit protein \| chr1:18084972-18087743 REVERSE LENGTH=495