barSeed - Barley Seed Development Database

Probe ABC04099

Source Contig ABC04099

barSeed

Links

Affymetrix Source Sequence (2040 bp)

>ABC04099 2040
ATAGGTGCAGCTTTGACAAAGTATAGGATGGGCAGATGTCGCGAAAGGAATAATCATGGT
TTTTGAAGACTGATAATGCTCCCTCGAGTACTACACAGCAAAAAAACTCAGCTGCTGACG
GGTATGCATTGGAGAGACTAACGCTGCTTTCTGAACTCAATCAATGTAAAGACGTTGCGA
GTAAACAAAGTTCCAAATACTTTGGCGCTGGCTGAACAACACCATTTCCACCAGACCAAG
ACGGTGGTATATACATCCGAATTCGAACCAAAGAGTGCCTTAAAAGGAGGGAATTAGCAG
GGCAAGGAAAGAATAATGGAAGGGCACGGCCGGCCGGCCAGGATGGTGCTCGCGGAGCTG
GGCGGGAGCATCTCCCGCGCGCTGGCGCGGATGAGCAGCGCGACGGTGGTCGACGAGAGC
GTGCTCCGGGAGTGCCTCAACGAGATCGCGCGGGCGCTCATGCAGTCCGACGTCCGGTTC
AAGACGGTCTGCGACCTGCAGGCCAACATCAGGAAGACCGTCAACCTCGAGGCCCTCGCC
GCCGGCACCAACAAGCGCCGCATTATAGAGACCTCCGTCGGGAAGGAGCTCTGCAAGATG
CTGGATACCGGGAAGCCCGCCTTCGTCCCCAAGAAGGGCAAGCCCAACGTCGTCATGTTC
GTCGGATTGCAAGGCTCTGGAAAAACAACCACCTGTACCAAGTACGCGCACTATCATCAG
CGCAAGGGATTTAAGCCGTCGCTGGTTTGCGCCGACACGTTCAGAGCCGGTGCTTTTGAT
CAGTTGAAGCAGAACGCAACCAAAGCCAAGATACCCTTTTACGGAAGCTACATGGAGTCA
GATCCTGTCAAGATTGCTGTTGAGGGCCTGGAAAAGTTCAGGCAAGAGAAATCTGATCTC
ATTATCATCGACACGAGTGGGCGCCATATGCAGGAGGCTGCACTCTTCGAGGAGATGCGC
CAAGTTGCTGAAGCAACGAAACCAGACCTGGTGATATTTGTGATGGATGGCAGCATTGGT
CAGGCTGCCTTTGATCAGGCACAGGCATTCAAACAGAGTGCTTCCGTTGGTGCTGTGATT
GTCACGAAATTGGATGGTCATGCGAAGGGAGGCGGTGCACTGAGCGCGGTTGCAGCTACG
AAAAGCCCGGTGATATTCATTGGAACTGGAGAACACATTGATGATTTTGACGTTTTTAAC
GTGGAACCATTCGTCGCCCGTCTGCTAGGTAGAGGAGACTTGCCTGGCTTAATCGACAAG
ATGGAGAGTATTGTGCCTGCTGATCAACAATCTGAGCTTGTGGCAAAGCTGTCTGAAGGA
GCCTTCACTCTCAGACTTCTGTATGAGCAATTCCAGAATCTTCTGAAAATGGGACCAATG
AGCCAGATCTTCTCCATGCTGCCTGGGTTTAGCTCGGAGTTGATGCCAAAAGGACAGGAG
AAACAAAGCAAAGAAAAGTTCAAGCGGTACATGACAATTATGGACTCCATGACACCTGCA
GAGCTCGACAGCACGAACCCGAAGCTGATGACCGAGTCGCGAACCATCCGGGTCGCTCGA
GGGTCCGGCAGGAAACTCAAGGACGTGATGGAGATGCTGGAAGAGTACAAGCGACTAGCC
AAGATGTGGAGCAAGCTGAATGTGTCGAAATTGATACCGCCGAATGGAAAGATGAGTGCT
CAGGCCATCCAGAAGATGCTCAAAGTCATGCCGCCACAAGTGGTGCAGCAGATGGGGGGC
AAAAGTGGCTTGGAGGCTCTCCTGAAACAATTGGGCGGAGGCAAGGACACGAGCAAAATG
CTTGCTGGCATGAGGGGTGGTGCTTAGTCTTGCAAATGTAGGTGGTGCGCTTGCTGCGTT
GTAGAATTTCTCTCCTGACAAGAAGATACTGCAGTATATGTTTTCCTAACTCCCCATTGT
ACTTAAATTTCTCTGGAACTGACGTGTATAGACAATCAAATTCACTGAGTGTGGATTTTG
TGACTTTATTATCTGGTTTACGTGGGCTTCTGGGGAGTTTGAAACCCCAAAGTTAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK368965	2898	0.0	923 - 2896	99	1974 / 1988	CUST_32154_PI390587928	ABC04099 ABC04101 ABC04102 ABC38864
MLOC_76006.1	1367	0.0	1 - 1362	99	1351 / 1364	CUST_13645_PI390587928	ABC04099 ABC04101 ABC38864
AK356037	1820	0.0	104 - 1619	86	1305 / 1522	CUST_13643_PI390587928	ABC04099 ABC04100 ABC04101
AK248481.1	2003	0.0	402 - 1917	86	1303 / 1522	None	ABC04099 ABC04100 ABC04101
MLOC_45152.1	652	0.0	105 - 648	89	482 / 544	None	ABC04099 ABC04101
MLOC_24369.1	1048	0.0	74 - 798	83	608 / 731	None	ABC04099 ABC04100 ABC04101
MLOC_27080.1	325	4e-170	1 - 325	100	325 / 325	None	ABC04099 ABC04101
MLOC_76006.2	300	3e-156	1 - 300	100	300 / 300	None	ABC04099 ABC04101
MLOC_79300.1	324	6e-94	4 - 206	98	198 / 203	None	ABC04099 ABC04102
MLOC_45626.1	370	8e-78	38 - 268	90	207 / 231	None	ABC04099 ABC04101
MLOC_46656.1	434	1e-55	276 - 400	98	123 / 125	None	ABC04099 ABC04102 ABC05367
MLOC_54113.1	361	4e-51	242 - 361	98	117 / 120	None	ABC04099