barSeed - Barley Seed Development Database

Probe CUST_13643_PI390587928

Source Contig U35_1493

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13643_PI390587928	Hv_44K_v2	ACTTTATTTCGAATTTCAATGGAAATAAGGCTCTGTCCGGTGTCACTCCGCTCCACAGCT	1710	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356037	1820	2e-24	1734 - 1793	100	60 / 60	plus	ABC04099 ABC04100 ABC04101
MLOC	MLOC_47302.1	272	2e-24	101 - 160	100	60 / 60	plus	ABC04100
JLOC1	JLOC1_30522.1	277	8e-25	101 - 160	100	60 / 60	plus
Harvest21	ABC04100	663	3e-25	46 - 105	100	60 / 60	minus	ABC04100
Harvest35	U35_1493	1805	3e-25	1711 - 1770	100	60 / 60	plus

Contig Sequence (1805 bp)

>U35_1493 1805 Hv_44K_v2
GCCTCTCCTCTCCCAGATCGCGCCGCTAACCGCCGCCGGAACCCCACCCTGCCAACGAGG
TCCGGCCCCCAGGGGGATCAGCCAAGATGGTGCTCGCGCAGCTGGGCGGGAGCATCTCCC
GCGCGCTCGCGCAGATGAGCAACGCCACGGTGATCGACGAGAAGGTGCTCGGGGAGTGCC
TCAACGAGATCTCCCGCGCGCTGCTGCAGTCCGACGTCCAGTTCAAGATGGTCCGCGACA
TGCAGACCAACATCAGGAAGATCGTCAACCTCGAGACCCTCGCCGCCGGCACCAACAAGC
GACGCATCATACAGCAGGCCGTCTTCACGGAGCTCTGCAACATGCTCGATCCAGGCAAGC
CGGCCTTCACCCCCAAGAAGGGCAAGCCCAGCGTCGTCATGTTCGTCGGGTTGCAAGGTT
CTGGAAAAACTACTACCTGTACCAAATACGCATATTATCATCAGCGGAAGGGATTCAAAC
CATCATTGGTTTGTGCCGATACATTTCGAGCTGGTGCTTTTGATCAGTTGAAACAGAATG
CAACCAAGGCTAAGATACCTTTTTACGGAAGCTACATGGAATCAGATCCTGTGAAAATTG
CTGTTGAGGGTCTAGAAAGGTTCAGGAAAGAGAACTCTGATCTCATCATTATTGATACGA
GTGGACGCCATAAGCAGGAGGCTGCACTCTTTGAGGAAATGCGTCAAGTTGCCGAAGCAA
CGAAACCAGACCTGGTGATATTTGTGATGGATGGCAGCATTGGTCAGGCTGCATTTGATC
AGGCACAGGCATTTAAACAAAGTGCTTCTGTTGGTGCTGTGATTATTACGAAATTGGATG
GTCATGCAAAAGGAGGCGGTGCACTGAGCGCGGTTGCAGCTACAAAAAGCCCAGTGATAT
TTATTGGAACTGGAGAACATATTGATGAATTTGAGATTTTTGATGTGAAGCCATTTGTCA
GCCGGCTGCTAGGTATGGGTGACTTGTCTGGCTTAATGGACAAGATCCAGGATGTTATGC
CTGCTGATCAACAACCTGAGCTTCTGGCAAAGCTGGCTGAAGGAACCTTCACTCTCAGAC
TTCTGTATGAGCAATTTCAGAATCTTCTGAAAATGGGTCCAATTGGCCAGGTATTCTCCA
TGTTGCCTGGATTTAGTTCAGAGTTGATGCCAAAAGGACACGAGAAAGAAGGCCAAGCAA
AGATTAAGCGGTACATGACGATCATGGACTCCATGACAGCTGCAGAGCTGGACAGCACAA
ACCCGAAGCTGATGACAGAGTCTCGAATCATCCGGATCGCTCGAGGGTCTGGCAGGCAAA
TCAGAGACGTGACGGACATGCTGGAAGAGTACAAGCGGCTAGCCAAGATGTGGAGCAAGA
TGAAGGGGCTAAAGATGCCGAAGAACGGAAAGATGAGCGATCTGTCCCAGAACCTGAACA
TCCAGCAGATGACCAAAGCCCTCCCGCCCCAAGTGCTGAAGCAGATGGGCGGCATGGGCG
GCCTGCAGGCCCTGATGAAGCAGATGGGCGGCAAGGACATGAGCAAAATGCTCGGTGGCA
TGGGACTGGGTGGTGATTAGCCTGGCAAATGTAGGTAGTCTCCTCCGGGCATAGGTGGTG
GTGTGTGCTTGCTGCGATGTGGAATTTGCTATATTTTTATAGATATCTAAAGATTTCAAT
CCTGACAAAGATTGTTCCCAACTCCTGACAACTTTATTTCGAATTTCAATGGAAATAAGG
CTCTGTCCGGTGTCACTCCGCTCCACAGCTGGGAGCGGACGGAGCGGTAGTTCAATTTCA
AAAAA

Homology of Contig U35_1493 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g56600.1	497	protein\|signal recognition particle 54 kDa protein, putative, expressed
Brachypodium v1_2	Bradi2g20340.1	499
Arabidopsis v10	AT1G48900.1	495	Signal recognition particle, SRP54 subunit protein \| chr1:18084972-18087743 REVERSE LENGTH=495