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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_13629_PI390587928Hv_44K_v2AAGCAACTGATTAAGATAGTAGTAGATGGGAATGGGAGCAATGTGGATGAAGAGCATGTT32GeneList: black
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0440.0400.4902.3223.93814.300
Raw 3.1774.65380.574568.246349.0711391.763



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK37580818902e-241321 - 138010060 / 60plus ABC00003 ABC00255 ABC06549 ABC34401 ABC42046
MLOCMLOC_81243.110612e-24853 - 91210060 / 60minus ABC00003 ABC00255 ABC34401
JLOC1JLOC1_54062.19198e-25711 - 77010060 / 60minus
Harvest21ABC434622753e-2571 - 13010060 / 60plus
Harvest21ABC002555423e-2563 - 12210060 / 60minusABC00255
Harvest21ABC000037213e-2567 - 12610060 / 60plusABC00003
Harvest21ABC007565425e-23308 - 36310056 / 56plus
Harvest35U35_3257023e-2533 - 9210060 / 60plus



Contig Sequence (702 bp)

>U35_325 702 Hv_44K_v2
AAGATAGTAAGAGTGTAGCTACGGATCGATATAAGCAACTGATTAAGATAGTAGTAGATG
GGAATGGGAGCAATGTGGATGAAGAGCATGTTGTTGGTGCTCCTGCTATGCATGCTCATG
GTGACTCCAATGACGGGCGCACGGAGTGATAACAGTGGCCCTTGGATGTGGTGTGATCCT
GAGATGGGCCACAAGGTGAGCCCGCTCACGCGCTGCCGAGCATTGGTGAAGCTCGAGTGT
GTGGGCAACCGGGTGCCCGAGGATGTCCTAAGAGACTGCTGCCAGGAGGTGGCCAACATC
AGCAACGAGTGGTGCAGGTGCGGCGACCTCGGCAGCATGCTGCGCAGCGTGTATGCGGCG
CTCGGCGTGGGGGGCGGACCGGAGGAGGTGTTCCCGGGTTGCCAGAAGGATGTGATGAAG
CTCTTGGTTGCAGGCGTGCCTGCGCTCTGCAATGTCCCCATTCCCAACGAGGCGGCAGGC
ACCAGAGGGGTCTGCTACTGGTCAGCGTCTACGGACACCTAGTCAAGCGATTATTATGCT
TTTTAATAATTTGTGTGGTGTGTGTGTGCGCGCACAAGATGAATAAAATGAAATAATGGT
GTATCTGCCAAAAAAAAAAAAAAAAATGCGACGCATGCGTCATGTATGAACCTGAACTTA
ATTTAATTTTCCTACTCATAGATAAAAAAAAAAAAAAAAAAA



Homology of Contig U35_325 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None