barSeed - Barley Seed Development Database

Probe CUST_13611_PI390587928

Source Contig U35_343

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13611_PI390587928	Hv_44K_v2	TTATTCTATGAAACGCTTAATAGTCGTCTGTTACTAAAAATGAACCCAGGCCATGGATCC	1507	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70373.1	758	2e-24	164 - 223	100	60 / 60	minus	ABC00824 ABC00972 ABC40733
Harvest21	ABC00824	1567	3e-25	1508 - 1567	100	60 / 60	plus	ABC00824
Harvest35	U35_343	1567	3e-25	1508 - 1567	100	60 / 60	plus

Contig Sequence (1567 bp)

>U35_343 1567 Hv_44K_v2
GGATCCAATTCGAAGACACACGAACATAGACGAACAACAACGACATCTGAGAAAATTCAC
CAAAGATAGATTCGCTGGAGACACACCTCCACACGTGCATCAACTATGCTAGCCGCATCG
CGAAACGGAGGCTAGACATAGAGACCTTTATTCTATCTTCAGTAAGCCGTTGTCGCAAAC
CCTAGCAAAACTAAAAATAACGATTAAAAACAGAGCCTCCTGCCAGCCCTTGCAAGATCC
ACCATGCCCCATGGTCCTAGGGCCATCGGAGTGGAGGCGGATCTGCGGCGGCGCTAGCAG
GAGGCAGAAACCCTAGCTTTTTTTGGAGGGAGGAGGAGGCGGCTGAAGGAGTCTCGTTTT
TAATCAGCCCCGACACCGCTAGCATGCTTGGTCGATCCATCGGCCGAACCAACATCCAAC
CATCTCCAAGATGCATTAATACCCATCTACATGTTCCAGCAACCAGCAACCGAAATTTAT
TATATTGGCTCACACCAATCGGATTTAACCCAATGGACGCAATACTTGGCACCATCGTAG
TTGGATCGCATGTTGCTAGCATCCCTATTTAAGCCCATACACCCCCTACGGAACTCCTCA
CCTGTTCGGTCACTTATTAGCAAATCTAGAGCTCACCACCACCACTATTGCAAACTCCTT
AGGGATGGCTCGCGCTGCAGCTACTCAGCTCGTGCTGGTCGCCATGGTGGCCGCCATGCT
CATCGTAGCTACCGACGCGGCCATCTCCTGCGGTCAGGTGAGCTCTGCCTTGAGCCCCTG
CATCTCCTATGCCCGCGGCAACGGCGCCAAACCGCCTGTGGCCTGCTGCAGCGGTGTCAA
GAGACTGGCCGGCGCAGCCCAGAGCACCGCTGACAAGCAAGCGGCGTGCAAGTGCATCAA
GAGCGCTGCGGGTGGGCTAAACGCTGGCAAGGCCGCCGGAATCCCCTCCATGTGCGGCGT
CAGCGTCCCCTACGCCATCAGTGCTTCCGTGGACTGCTCTAAGATTCGCTGATCAACCAC
TTGCTGCCTATAGCCCCAGCGATCGACGCTGAGTACGTTGAGGTCACACATACATACATA
TATATGAATAAATGCACAATATTATCTTCATGTGGGATATAGAGAGAGAGAGGAGTGCGT
ATGTTGAGCCAGTTCTGCATGGCCGGCCATACTGTACTATCGATGTTTGGTTGTTCCTTC
ACTCCCTTTGAGGGGACCTATGAGTTTATTGTACTTTGTAACATGTGCACTAAAGATATA
TGGATCATACACTCAGCTCTACCTCCTTTAAAAAAAAAAAAAAAAAAAATGCCTGCGTGC
GTCGTTATTCAACTATTCCAATCCTGTTTATTGCTCCAATAAAACATATGAAAATGAACC
CAATTTACTGGGAACTGAACTATGACATTTCAGTCATTTTGGTTCCTCAACTAAACACAC
CCTAAAACTGTTTGACAACACACATAATTCTAGTGAATGCAATCACCAACAAAAACTCCT
ACTGGCTTTATTCTATGAAACGCTTAATAGTCGTCTGTTACTAAAAATGAACCCAGGCCA
TGGATCC

Homology of Contig U35_343 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None