barSeed - Barley Seed Development Database

Probe CUST_13604_PI390587928

Source Contig U35_28316

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13604_PI390587928	Hv_44K_v2	TTGTGAAAGATGTCTTCCTCCCGTGGTATAATGCTTATAGATTTCTTGTCCAAAACGCGA	581	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363613	5070	2e-24	2121 - 2180	100	60 / 60	plus	ABC09189 ABC13844 ABC17852 ABC41122 ABC44969
MLOC	MLOC_4966.5	3763	2e-24	2061 - 2120	100	60 / 60	plus	ABC09189
MLOC	MLOC_4966.2	3829	2e-24	2065 - 2124	100	60 / 60	plus	ABC09189
MLOC	MLOC_4966.3	3750	2e-24	2065 - 2124	100	60 / 60	plus	ABC09189
MLOC	MLOC_4966.1	3397	2e-24	2065 - 2124	100	60 / 60	plus	ABC09189
MLOC	MLOC_4966.4	3806	2e-24	2062 - 2121	100	60 / 60	plus	ABC09189 ABC38397
JLOC1	JLOC1_3163.1	3948	8e-25	2063 - 2122	100	60 / 60	plus
Harvest21	ABC27121	641	3e-25	582 - 641	100	60 / 60	plus
Harvest35	U35_28316	641	3e-25	582 - 641	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_28316 641 Hv_44K_v2
GGTTAGCAGGAGTAGATTCTGGGGTACTCCACTTCCAGTGTGGATCAGCCAAGATGGTGA
AGAAATTGTAGTTATGGATTCCATTGAGAAACTTGAAAGATTATCTGGCGTCAAGGTTAA
CGATCTTCACCGCCACCATGTTGATGATATTACGATTCCTTCTAGCAGAGGACCAGAGTT
TGGGGTTCTCAAGCGTGTTGAGGATGTTTTTGACTGCTGGTTTGAGAGTGGGTCCATGCC
ATATGCCTACATTCATTATCCATTTGAGAATCGTGAACTATTTGAGAAGAATTTCCCTGG
CAACTTTGTGGCCGAGGGCTTGGACCAAACACGTGGATGGTTTTATACTCTGATGGTGTT
ATCAACGGCATTATTTGGGAAGCCTGCTTTTAAGAATCTTATATGCAATGGTCTTGTTTT
GGCAGAGGATGGGAAGAAAATGAGCAAGAGTAAACAGAATTACCCTTCACCTATGGAAGT
TATTGATGAATACGGAGCGGATGCTTTGAGACTGTATTTGGTGAATTCTCCAGTTGTACG
TGCGGAGTCTCTACGATTTAAAAGGATTGGTGTTTTTGGTGTTGTGAAAGATGTCTTCCT
CCCGTGGTATAATGCTTATAGATTTCTTGTCCAAAACGCGA

Homology of Contig U35_28316 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g43760.1	1158	2e-141	protein\|tRNA synthetase class I, putative, expressed
Brachypodium v1_2	Bradi1g30610.1	1173	9e-142
Arabidopsis v10	AT4G10320.1	1190	9e-131	tRNA synthetase class I (I, L, M and V) family protein \| chr4:6397526-6404509 REVERSE LENGTH=1190