barSeed - Barley Seed Development Database

Probe CUST_13559_PI390587928

Source Contig U35_30643

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13559_PI390587928	Hv_44K_v2	GGCTGGCCACAACTTTTAAATTAAAACTCCAAATGAGTTGATTCTTTTTCTCACCTCTTT	564	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249179.1	2702	2e-24	586 - 645	100	60 / 60	plus	ABC13024 ABC17862 ABC26250
JLOC1	JLOC1_1455.1	1624	8e-25	801 - 860	100	60 / 60	minus
Harvest21	ABC30648	662	3e-25	565 - 624	100	60 / 60	plus
Harvest35	U35_30643	662	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (662 bp)

>U35_30643 662 Hv_44K_v2
GAGACCACCCCCTTCACTCGATTTGGCCGGAGGCAGCCGTCTTCCCCAGCTCCGGTATGC
CTCGACCGCCCCATCCCCGGCATAAATTAGCCACCCTTGGGCCCCCTCCGACGCTGTTCT
TTCCGGGAATCGAACTGCACGAGAATCCCGTGTGTTTTCCCCTCTCTGCGTGGCTCGGGA
TGGACCCGGGGCGAAGCCCCCTTGCTAGCCGCACCGCCGTCCGCCAGCCTCGTTGTCGCC
GGAGCTCCAGAGCCCCCTGGAGGTCGTGCCGCACCTCCCGCAAGCCGTCGTGAATCCCTG
AGCGCGATGGTACCCTCAGGTGCCCGTAAGATGGCCCAAGTCGCCGGCGGGCACCGGCGG
AGGCCTTCCCTCCCTTCGGCCCGAGGAGGAAGAAAGCAGGCTTGACCCAGGTCAAACCTG
CCGGTGGCCCCCGCGTGCCAGCAATAGGACAGAGCCGCCGCCCGCGTAAGTGGAGACTCC
TTCCACCAAGTACGCCTCTCCCTCGCGCTTACGCAGTCCCTGTCGAACCGTTTTGTTTAA
AAAATAGATCTTTGACCCAGGTTTGGCTGGCCACAACTTTTAAATTAAAACTCCAAATGA
GTTGATTCTTTTTCTCACCTCTTTAAAATTTTATCTAGTTTATTTTAGTATTTATTTAAA
AA

Homology of Contig U35_30643 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None