- Probe CUST_13547_PI390587928
- Source Contig U35_16356
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13547_PI390587928 | Hv_44K_v2 | AGCAATGGTGAATCTAAAAGGGTTAACATAAACTATAGCAGTCCAAATGGTGGAGAGGCC | 777 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369718 | 1159 | 2e-24 | 423 - 482 | 100 | 60 / 60 | plus | ABC06566 ABC06567 ABC18391 ABC41286 |
| MLOC | MLOC_29600.5 | 506 | 2e-24 | 27 - 86 | 100 | 60 / 60 | minus | ABC06566 ABC06567 |
| MLOC | MLOC_29600.2 | 306 | 2e-24 | 31 - 90 | 100 | 60 / 60 | minus | ABC06566 ABC06567 |
| MLOC | MLOC_29600.11 | 715 | 2e-24 | 158 - 217 | 100 | 60 / 60 | minus | ABC06566 ABC06567 |
| MLOC | MLOC_29600.4 | 1027 | 2e-24 | 29 - 88 | 100 | 60 / 60 | minus | ABC06566 ABC06567 |
| MLOC | MLOC_29600.7 | 706 | 2e-24 | 165 - 224 | 100 | 60 / 60 | minus | ABC06566 ABC06567 |
| MLOC | MLOC_29600.8 | 1177 | 2e-24 | 165 - 224 | 100 | 60 / 60 | minus | ABC06566 ABC06567 |
| MLOC | MLOC_29600.10 | 566 | 2e-24 | 25 - 84 | 100 | 60 / 60 | minus | ABC06566 ABC06567 |
| MLOC | MLOC_79340.3 | 1146 | 3e-21 | 944 - 1003 | 97 | 58 / 60 | plus | ABC06566 ABC06567 |
| MLOC | MLOC_79340.4 | 794 | 3e-21 | 592 - 651 | 97 | 58 / 60 | plus | ABC06566 ABC06567 |
| MLOC | MLOC_79340.5 | 676 | 3e-21 | 473 - 532 | 97 | 58 / 60 | plus | ABC06566 ABC06567 |
| MLOC | MLOC_30393.1 | 457 | 3e-21 | 171 - 230 | 97 | 58 / 60 | plus | ABC06566 ABC06567 |
| JLOC1 | JLOC1_19681.4 | 569 | 8e-25 | 479 - 538 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_19681.3 | 586 | 8e-25 | 496 - 555 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_19681.2 | 1175 | 8e-25 | 945 - 1004 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_19681.1 | 542 | 8e-25 | 421 - 480 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_52852.2 | 1143 | 2e-21 | 940 - 999 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_52852.1 | 676 | 2e-21 | 473 - 532 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC06564 | 1092 | 3e-25 | 778 - 837 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06565 | 1006 | 6e-22 | 696 - 755 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_16356 | 1092 | 3e-25 | 778 - 837 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16357 | 1008 | 6e-22 | 696 - 755 | 97 | 58 / 60 | plus |
Contig Sequence (1092 bp)
>U35_16356 1092 Hv_44K_v2 ACGCACCAGATCTAGATCACCCTAGCCCATCCTCTTCCCGCTTCATCCCCGGCGCCGGCG CCCCTGGCTCCACGCCCCGGCGACCTCGGCTCCGCGCCCCCGCGCCCTGGCCTCGCCCCT GACACCCCACGCCCCGGCGACCCCGGCCTCGCCGCCGCGCCCCCGGAGACCAGAGCACCT GCGCGCGAGCGAGTGCGCGGCTGCCCAAGCCTCCTCCCGGTTCTGTTCCATCCCCTCGGC CTCCTCGCCCCCTCCGTGCCGCGCGTGCATCGACGGGGGCGTCCAGATCCCGGTCGACAC ATGGCGATCAGGCCCCCCTTCCAGATCCCGATCCCCCGGACCCCTCGCCGCGGCCGATGC GACCCGCGGCGCCCCCGCGCTGCCGGATCGGACGACGATCCGGCTGACGCCCGCCTCCCG CTCCCGCGACGTGCCCGGAATTTCGCCCCGAATTCGATGGGCTCCTATGGATTCGCCGCG CTCGCGGCGCTCCTCCTTGCCTTTGCCCTGCTACCGGACCCTGCGGCGGCGGCTAGGGTT TTGCAGGGCAAGGAGCCCGGCTCTGGCGAGGGAGCTCCTGCACCTACCCTCGCTACAGGC GAATGTGAGAAGATTGGCACCTCCAAACAACTTGATCAATCATCAACCGCTCTGCAGAAC CCTGAGACCGATTCAATTGGACAATTTTTTGTAGTCCAGAATACTGGCCAGAAAAAAGTA ACTGTTGGCGTCAAAGCAACATCAGATATAAGTATTAAGCAGACATTGCTACCTCTCAGC AATGGTGAATCTAAAAGGGTTAACATAAACTATAGCAGTCCAAATGGTGGAGAGGCCTTA CTGTACATATTTCAAGCTTTCCATGCAGATTTGGTCTTACTTTATGAAATGCGTGCATTG ATCTTCAATACACTTGAATAATTATTATGTGCACATTAGAGATTGAACTTATGGAGTTTA CTCGTCTCTTTCTTGATGACAGGCTACTAAAATAGGCGAAATAAATCTTGCTGCTACTGG AAAGGATCGTATGGACAACTAGAAGCAGGAAATAACGATCGATTTATACACAACATTGGA GATGGAAAATGA
Homology of Contig U35_16356 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |