barSeed - Barley Seed Development Database

Probe CUST_13546_PI390587928

Source Contig U35_16357

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13546_PI390587928	Hv_44K_v2	ACGATCGATTTATACACAACATTGGAGATGGAAAATGATATAATTGATGAGCGAGCCCCT	945	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369718	1159	7e-23	700 - 759	98	59 / 60	plus	ABC06566 ABC06567 ABC18391 ABC41286
MLOC	MLOC_68405.2	1921	7e-23	733 - 792	98	59 / 60	minus	None
MLOC	MLOC_68405.3	1910	7e-23	640 - 699	98	59 / 60	minus	None
MLOC	MLOC_68405.1	2154	7e-23	966 - 1025	98	59 / 60	minus	None
MLOC	MLOC_25400.1	362	3e-21	136 - 192	98	56 / 57	plus	None
JLOC1	JLOC1_45257.1	2128	4e-23	1217 - 1276	98	59 / 60	plus
Harvest21	ABC06565	1006	3e-25	946 - 1005	100	60 / 60	plus
Harvest21	ABC48007	650	1e-23	466 - 525	98	59 / 60	plus
Harvest35	U35_16357	1008	3e-25	946 - 1005	100	60 / 60	plus
Harvest35	U35_47175	650	1e-23	466 - 525	98	59 / 60	plus
Harvest35	U35_16360	1155	1e-23	445 - 504	98	59 / 60	plus

Contig Sequence (1008 bp)

>U35_16357 1008 Hv_44K_v2
GACCTCGGCTCCGCGCCCCCGCGCCGTGGCCCCGCCCGTGACACCCCACACCCCGGCGAC
CCCGGCCTCACCGCCGCGCCCCCGGAGACCAGAGCACCTGCGCGCGAGCGAGTGCGCGGC
TGCCAGGGCCTCCTCCCGATTCCGTTCTGTCCCCTCGGCCTCCTCGCCCCCTCCATGCCG
CGCGTGCATCAATGGAGGCTTCCAGATCCCAGTCGACACGCGGCGATCTGGCCCCCCTTC
CAGATCCCGATCCCCCGGACCCCTCGCCGCGGCCGATGCGACCCGTGGCGCCCCCGCGCT
CCCGAATCGGACGACGATCCAGCTGACGCCCGCCTCCCGGTCCTGCGACGCGCCCGGAAA
TTCGTCCCGAATTCGATGGGCTCCTCCGGATTGCCGCGCTCGCAGCGCTCCTCCTTACCT
TCGCCCTGCTACCGGACCCTGCGGCGGCGGCTAGGGTTTTGCAGGGCAAGAAGCCCGGCT
CCGGCGAGGGAGCTCCTGCACTTACCCTCGCTACAGGCGGATCTAAGAAGAGTGGCACCT
CCAAACAACTTGATCAATCATCAACTGCTCTGCAGAACCCTGAGACCGATTCAATTGGAC
AATTTTTTGTAGTCCAGAATACTGGCGAGAAAAAAGTAACAGTTGGCGTCCAAGCAACAT
CAGATATAAGTAGTAAGCAGACATTGCTACCTCTCAGCAAGGGTGAATCTAAAAGGGTTA
ACATAAGCTATAGCAGTCCAAATGGTGGAGAGGCCTTACTGTACATATTTCAAGCTTTAC
ATGCAGATTTGGTCTTCAATACACTTGAATAATTATTATGTACACATTAGATATTGAACT
TATGGAGTTTACTCGTCTCTTTCTTGATGACATGCTACTAAAATAGGCGAAATAAATCTT
GCTGCTACTGGAAAGGATCGTATGGACAACTAGAAGCAGGAAATAACGATCGATTTATAC
ACAACATTGGAGATGGAAAATGATATAATTGATGAGCGAGCCCCTCAG

Homology of Contig U35_16357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None