barSeed - Barley Seed Development Database

Probe CUST_13533_PI390587928

Source Contig U35_42627

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13533_PI390587928	Hv_44K_v2	TGTCCTTTTTCTTGCTGTAAAATATAACTGGCAAATTGGTAAGATGGCTCTAACATCCTT	44	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32152.1	737	2e-24	97 - 156	100	60 / 60	minus	ABC16646 ABC38406
JLOC1	JLOC1_21023.1	751	8e-25	584 - 643	100	60 / 60	plus
Harvest21	ABC38406	525	3e-25	45 - 104	100	60 / 60	minus	ABC38406
Harvest35	U35_42627	525	3e-25	45 - 104	100	60 / 60	minus

Contig Sequence (525 bp)

>U35_42627 525 Hv_44K_v2
TTTTTTTTTTTTTTTTTACCAATTTTTCAGTTATATTTTATTGAAAGGATGTTAGAGCCA
TCTTACCAATTTGCCAGTTATATTTTACAGCAAGAAAAAGGACAAGAGAGCTGAGACAAC
ACTAATAGATGTAAGGCACTAAGAAAGCAGCCAGATAAATATGCAAATATACCCAAAAAA
TAGCATGAGTGTGAAAAGACATAGGGCCACTAAAATTTGAGATGATCCAAGAGTAATATA
TTTGTCAGTGATTATTGATACTGACATATGTATTCCTGTGCGGGAGTTGGGCAAGTCCCT
GGCCGCCGTTATTCCTTGCCCGTCGAGAGAGGACCATGGCCCCGATCGAGGGCCGCTTCC
CCGCCGCCACTTCAGAGAAACTGGGAAGAAAAATGGCCTCTAAAAGTGTGAAGTTCCAGG
TTACTTTTTTCTTGATTTCTGATGACTGGGAAGAACGTTCTCTCCACATTGATGGATTCC
TTAGCATAATTCGCAAGAAAACTCATTCCTAATGATTCTACAAAT

Homology of Contig U35_42627 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None