- Probe CUST_13519_PI390587928
- Source Contig U35_30655
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13519_PI390587928 | Hv_44K_v2 | TGTTTGATTCAACTGTTTTGTTTTGACCACGAGGTGGGGAGTGGAGAAAATGACCACGAG | 442 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.432 | 1.201 | 1.277 | 0.688 | 0.309 | 0.384 |
| Raw | 935.347 | 1185.964 | 1144.212 | 923.792 | 150.796 | 206.913 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_51552.1 | 733 | 2e-24 | 36 - 95 | 100 | 60 / 60 | minus | ABC03237 ABC30667 ABC46432 |
| Harvest21 | ABC30667 | 555 | 3e-25 | 443 - 502 | 100 | 60 / 60 | plus | ABC30667 |
| Harvest35 | U35_30655 | 555 | 3e-25 | 443 - 502 | 100 | 60 / 60 | plus |
Contig Sequence (555 bp)
>U35_30655 555 Hv_44K_v2 CAGAGAAGGGACGAGCATTGTGCAGGCGAGGCAAGGTGCTCTTCTCCAGGCGCAGTTTGA AGACGACGACGAGATGACGAGGGAGGCAGCACAAGGCGCGAGAAGGTGCTCCTCTGCTGC GGCGAACGGCGATCAGGCGAGGGAGGCGATGGCGGGCGAACGGCGACCAGGCGAGCCCCA AGAACGAGCACCACGAACGGCGACCAGGCGAGGCCCACGAACGGCGATCAGGCGAGGCAG GCGATGGCGGCGAACGGCTACCGGCGAGGCCCAAGAATGAGCACCACGAACGGCGACCAC GCAGGCGAACGGCGATCAGACGAGGCAGGCGATGGCGGCGAACGGCGACCAGGCCAGGCA GGCGAACGGCGATCAGGCGAGGGAGGCGTGCGTGCGTGGGTGATATTGTAATCAACTATG GACGAGCGTGCGTGCGTGGGTGTGTTTGATTCAACTGTTTTGTTTTGACCACGAGGTGGG GAGTGGAGAAAATGACCACGAGGGTGGGGAGGTACCTGATTGGTTTTTGGACGGGGAGAA AAAAAAAAAAAAAAA
Homology of Contig U35_30655 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |