barSeed - Barley Seed Development Database

Probe CUST_13505_PI390587928

Source Contig U35_16394

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13505_PI390587928	Hv_44K_v2	CCCCTTATACCTGCAGTAGTATGCTATTTTAGATCATTATTCCATTATTTTAGGGTGTCA	931	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65057.4	4324	2e-24	3146 - 3205	100	60 / 60	plus	ABC05435 ABC09660
MLOC	MLOC_65057.17	2185	2e-24	1069 - 1128	100	60 / 60	plus	ABC05435
MLOC	MLOC_65057.15	2084	2e-24	999 - 1058	100	60 / 60	plus	ABC05435
MLOC	MLOC_65057.10	3635	2e-24	2109 - 2168	100	60 / 60	plus	ABC05435
MLOC	MLOC_65057.8	2266	2e-24	1248 - 1307	100	60 / 60	plus	ABC05435
MLOC	MLOC_65057.7	2299	2e-24	1318 - 1377	100	60 / 60	plus	ABC05435
MLOC	MLOC_65057.11	1715	2e-24	958 - 1017	100	60 / 60	plus	ABC05435
Harvest35	U35_16394	1032	3e-25	932 - 991	100	60 / 60	plus

Contig Sequence (1032 bp)

>U35_16394 1032 Hv_44K_v2
CGTCTGTGACCAAGCAATTGTCCCCGCCGCCGTCGTCTCGAGAGCTTCGTTCGGTAGAGG
GTAGAATCGATCTAGCGATGGAGTGCCTTGCCGAGATGCCGCACGCGCCGCTCGACCGCC
GCCCGCGCAAGCGGCAGCGCCTTGGCTGGGATGTCGGCCCCGAGATCCCTCAGCTAAAAA
AATTGTGTGGGGAAGAAGTCGCAAATGCAATTAGTGCTATGACGATGGGGCTTTCTTCAG
GTGGCATTGTTTCCTCTCAGGAGGCCCAAGAGCTTTTTCGTTTTGCGACCCCTCCTCTGA
GAGAAGATGACAAGGATGGGCACTATGTTTTTGCTGTGGGAGACAACCTCACATCTCGCT
ATAGGATTAATGCAAAAATGGGTGAAGGTACCTTTGGTCAGGTGTTGGAATGTTGGGACA
GGGAACGGAAAGAAATGGTGGCTATTAAGATCATCAGAGGCATTAAGAAGTACAGGGATG
CTGCAATGATAGAAATTGGCATGCTCGAGCAGCTTTGTAAATATGAAAAGAGCAGATCCA
GGTGAGTCCTCAGTTTCACTTATCACAATTCCTGTTGTGTATATTGTGTTGTCTCGTCTG
TGTGATTTACTTTGTTAAGATTGCCTGTATATAAGCTGGTCTATTTTGCAGTTGTGTTCA
AATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTGTAAGTACATCATTAGATTA
TGGCAGAGTTATCAACTAACTACAAAGAGATAACCCTGAGCTTAAACATTGGTGAATTTG
AATGAATGGTGGGCAGGTCTGTGAGAAGCTTGGACCAAGCTTATATGATTTTCTGCGGAA
AAACAGTTACCGCTCATTCCCAGTTGCCATAGTTCGGGAGGTTGCCAAACAACTGTTGGA
ATGTCTAGCATGTGTGTGCACACTTCTGCTACCCCTTATACCTGCAGTAGTATGCTATTT
TAGATCATTATTCCATTATTTTAGGGTGTCATCTGTTGATGACTGTTGTTTATTATTTGA
TCATCATCGCTA

Homology of Contig U35_16394 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g27520.1	424	8e-90	protein\|serine/threonine-protein kinase AFC2, putative, expressed
Brachypodium v1_2	Bradi2g11640.3	428	9e-100
Arabidopsis v10	AT4G24740.1	427	2e-65	\| Symbols: AFC2, AME1, FC2 \| FUS3-complementing gene 2 \| chr4:12754729-12757653 REVERSE LENGTH=427