barSeed - Barley Seed Development Database

Probe CUST_13456_PI390587928

Source Contig U35_28387

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13456_PI390587928	Hv_44K_v2	TCAAGTTTGGAAATTCTGGAGATCACCATGTCCGACAGGGCAAGCAACAATATGACTGGA	667	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362685	2202	7e-23	562 - 621	98	59 / 60	plus	ABC26079 ABC26631 ABC35374 ABC49958
MLOC	AK357926	2134	7e-23	706 - 765	98	59 / 60	plus	ABC26079 ABC26631 ABC35374 ABC49958
MLOC	AK360433	1875	7e-23	561 - 620	98	59 / 60	plus	ABC26079 ABC26631 ABC35374 ABC49958
MLOC	MLOC_59859.6	1757	7e-23	587 - 646	98	59 / 60	plus	ABC26079 ABC26631 ABC35374 ABC49958
MLOC	MLOC_59859.7	1735	7e-23	587 - 646	98	59 / 60	plus	ABC26079 ABC26631 ABC35374 ABC49958
MLOC	MLOC_59859.5	1912	7e-23	587 - 646	98	59 / 60	plus	ABC26079 ABC26631 ABC35374 ABC49958
MLOC	MLOC_59859.2	1927	7e-23	592 - 651	98	59 / 60	plus	ABC26079 ABC26631 ABC35374 ABC49958
MLOC	MLOC_59859.3	2043	7e-23	592 - 651	98	59 / 60	plus	ABC26079 ABC26631 ABC35374 ABC49958
MLOC	MLOC_59859.4	1949	7e-23	592 - 651	98	59 / 60	plus	ABC26079 ABC26631 ABC35374 ABC49958
MLOC	MLOC_59859.1	2378	7e-23	592 - 651	98	59 / 60	plus	ABC26079 ABC26631 ABC35374 ABC49958
JLOC1	JLOC1_38986.3	1909	4e-23	380 - 439	98	59 / 60	plus
JLOC1	JLOC1_38986.2	1940	4e-23	527 - 586	98	59 / 60	plus
JLOC1	JLOC1_38986.1	1962	4e-23	527 - 586	98	59 / 60	plus
Harvest21	ABC27228	728	3e-25	668 - 727	100	60 / 60	plus
Harvest35	U35_28387	728	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (728 bp)

>U35_28387 728 Hv_44K_v2
GCTTTGTTGTGACTGATCAGATTTATATTTGACAAGTTGGCTTATACTGACATAGTGACA
TGCTGTAGTTGCTAGACCCGTTATTCTATATACATGATCAATAGATGACCTCAGGCTGTT
AGATGATCCCTGGTTGTTGATCATTGATTATCATACATGTTATTCTGGTACAGGATTATA
GATGCCACCATCTGGTTTTGGAATTCTATGTGCACAATTGTTGTATGTAGTTAGGGCCTT
GTTGATGACAAGACAAGACAAGACTGCTTGTCTTCTGTGTCTCTTAAAGCTTTTCACATC
CCGCTGTTGCTTATGTACAGTGAAATTATCATATGGACTTAAGTTGACCCAAAATGCATT
GTGATATTCTGAATATGGTCGAAGAAACATGGTTAATCTAGCTTTGGTGCTTCAGTACAT
GTTTCTCTGCCCTGCTTATTTACAATGAAATTACTGTATGCACCTAAGTTGATGCGAGAG
TGGATTAGTAATAGCCATGCATTGTTTTGGATCTGGCTGCAGCGACAATTAATCTAGTTC
CAGTCCTCTCATGTGTTTGTTTCCTATGCCGAGAAAAGATGTACCGCCGACGACATTCAT
CTTATTCGTCTATGTTTGATTCAGCGACGTTGATGCCACTATGCTGTCATGTCTTGCATT
TTCTTGCTCAAGTTTGGAAATTCTGGAGATCACCATGTCCGACAGGGCAAGCAACAATAT
GACTGGAG

Homology of Contig U35_28387 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None