barSeed - Barley Seed Development Database

Probe CUST_13434_PI390587928

Source Contig U35_42693

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13434_PI390587928	Hv_44K_v2	GACCATTCAATCCCAAACAGTGTGACATACATGACCTTGATATATGGTCTTTATATAGAT	497	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68565.1	2284	2e-24	495 - 554	100	60 / 60	minus	ABC38521
JLOC1	JLOC1_45373.1	4014	8e-25	2244 - 2303	100	60 / 60	minus
Harvest21	ABC38520	560	3e-25	498 - 557	100	60 / 60	plus
Harvest35	U35_42693	560	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (560 bp)

>U35_42693 560 Hv_44K_v2
GGTTTCTTGAAGCAATGCAGCAATCTGGTATTAATCTTAATGCTGCTGCATTCAACGCGC
TAATTGATGAGTACTGCAAGAATGGAAATCTAGCTGAAGCCCTGGCAACATGCACAATAA
TGAGTGAGATTGGAATTGACGCCAATGTGGTGACGTACTCCTCCTTGATAGATGGGCATT
CAAAGAAAGGGAAGATGGAAATAGCAATGGCTATATACACGGAGATGATAGCCAAAGGGG
TTGAACCTAATGTGTTGACATACACGGCTCTGATTCATGGCCATGCCAAGGATGGTGACA
TCAATGCTGCTTTTAGGTTACAGAAGGAGATGGCGGAGAAAGGCATTTCTCCAAATTCAG
TCACTGTGTCGGTTCTTGTTGATGGTCTCTGCAGAGAGAATAGGATTCAAGATGCAGTCA
TGATTTTCATGAAGCACTCAGGGCAGAAGAAGCCTGCTGACATTCATACCTGTTTATCGA
ACTCCACAACTGAGGAAGACCATTCAATCCCAAACAGTGTGACATACATGACCTTGATAT
ATGGTCTTTATATAGATGGC

Homology of Contig U35_42693 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g25050.1	619	1e-80	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g30030.1	621	3e-91
Arabidopsis v10	None