barSeed - Barley Seed Development Database

Probe CUST_1342_PI390587928

Source Contig U35_30075

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1342_PI390587928	Hv_44K_v2	TGCATGGAGCATCTCATGGGATAATATAAGAGGCAACAGTAGAGAAGAAGATACGAAACA	436	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372300	1091	2e-24	837 - 896	100	60 / 60	plus	ABC01494 ABC01497
MLOC	MLOC_35244.1	725	2e-24	654 - 713	100	60 / 60	minus	None
MLOC	MLOC_35242.1	438	2e-24	37 - 96	100	60 / 60	minus	None
MLOC	MLOC_29451.1	195	7e-23	84 - 143	98	59 / 60	plus	ABC01494
Harvest21	ABC29777	611	3e-25	437 - 496	100	60 / 60	plus
Harvest21	ABC01494	1061	3e-25	638 - 697	100	60 / 60	plus	ABC01494
Harvest35	U35_30075	611	3e-25	437 - 496	100	60 / 60	plus
Harvest35	U35_14290	1109	3e-25	638 - 697	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_30075 611 Hv_44K_v2
TTTTGAGGGCATGCAATTGAAGAATACACCACTTTTTGCCAACGATACTAGAGTAATCAT
ATCTACTGCAAGCGAGATGTATTTTCTTTTTGTTGGAGATATTCTGCATCTTAATTTTAT
GGACAGTAACATTTTAGACATCAATTTGATGTCCTAACCATCAAGATCAACTTCGACATG
TCTGGTCTCTAGAAGTTACTGTTGACCATCATTGGTGCATCTTGTAAGGCTCGCGACCAA
GATGAACGTCATCGGCAATGGTGGTGCCGCGTGTGAGATCCTCCTCCCTAACAAGGCCGT
CGTTGCATCATCTACTCTCTGCCGCTGGATCCCCTCCTCTCCGACAAGGCCACCATAGGA
TCCCCTCTTCTCCGACAAGGACATGAAGAACCGCCCGAGATCTGCAAGTACCTCTTCAAG
GGTGCAAGGAGATGATTGCATGGAGCATCTCATGGGATAATATAAGAGGCAACAGTAGAG
AAGAAGATACGAAACANAAGGATGATCTGAAGCACCCAGAAGAAGTAGAGGACATGACAG
GAGGAGGGAACAAGAAGNTTTGTTTATCATTGATGTTATGTGTGATCAACAAAAACTTGA
ACTTTTATGTG

Homology of Contig U35_30075 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None