barSeed - Barley Seed Development Database

Probe CUST_13377_PI390587928

Source Contig U35_16230

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13377_PI390587928	Hv_44K_v2	TTAGCAGCAGCACTGAGTGTTATACTCCCAAGAATACAGTAGTTACCAAGATTCAAAAAA	892	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.803	5.491	1.366	0.741	0.612	0.527
Raw	68.001	104.163	21.681	18.571	3.742	2.826

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38414.1	867	9e-22	776 - 830	100	55 / 55	plus	ABC04610
MLOC	MLOC_38413.1	2497	9e-22	49 - 103	100	55 / 55	minus	ABC04610 ABC19934
MLOC	MLOC_38414.2	1637	9e-22	18 - 72	100	55 / 55	minus	ABC04610
MLOC	MLOC_38413.2	2809	9e-22	8 - 62	100	55 / 55	minus	ABC04610 ABC19934
MLOC	AK251582.1	515	3e-21	462 - 515	100	54 / 54	plus	ABC04610
JLOC1	JLOC1_24974.1	2868	5e-22	58 - 112	100	55 / 55	minus
JLOC1	JLOC1_24975.1	2674	5e-22	2528 - 2582	100	55 / 55	plus
Harvest21	ABC04611	832	3e-25	12 - 71	100	60 / 60	minus
Harvest35	U35_16230	963	3e-25	893 - 952	100	60 / 60	plus

Contig Sequence (963 bp)

>U35_16230 963 Hv_44K_v2
TGCGTACGTGTACGTGTGCGGGAGAGGTGCCGCGGACGCGGCTGTGCAGCGCCCCCTCAG
GCAGTCAGCACGCCGAGGATAAGGTGAGATAAAAGGGAGCCAGAGGCGCGGGTGTGCGGC
CGAGCAGCAACGGTGGAACTACTCCGCAACCATGGCGCCAGCAGCCCTGTCGGCCACCGT
CCTTCGCGTCTCTGCCGGTGTTAGGACCGCCGTCGCCGCACCCGCCGGCGTACTCCGGTT
TGGCAAGACGGCTTGCCTGCACTCCGGCCACTCTGAGGCCAAGCTGTGCTGCGATCGAAC
GCGCTGCAGCTGAGGCCCGTGGGACAGAGGAGGCGCTCGGCGCTGAGAAGCAGCGTGGAT
GACTCCAAAGCCACGGATGACAAGGTGGAGTTCGGGTACTCGAGGAAAGACGTGCTGCTG
ATCGGCGTCGGCGTCACCCTCCTCGGCTACGGCCTCAAGTCCGGCCTCGAGTTCCTCGGC
GTCGACCCCTTGCAAGCCGGCAACGTGGTCCAGCTCTTCATCGTGCTCGGGATGACGGTA
GGGTGGATCTCCTCCTACATGATCCGGGTGGCCAACAAGGACATGACCTACGCCACGCAG
CTCAGGAACTACGAGAAGCAAGTCATGGAGAAACGGCTGGAGAGCCTGTCGGAGGCGGAG
CTGCAGGTGCTGCTGGAGCAGGTGGAGGAGGAGAAGGAACGCCTGCCGCCGATGAGGAGG
GATCAGGGTATCACCATCAACAGGAAGACGGAGGATCAAACCACTGCCAACTGATAGCTA
GAACACCTCGATAATGATACTAGCCCAGTACACACACACTGTTAGGATAGCTTGCATCGA
TGTATTACGGCTTTTCCTTTGTTATAAGAATCTGTAGCACAATGTAGTGCTTTTAGCAGC
AGCACTGAGTGTTATACTCCCAAGAATACAGTAGTTACCAAGATTCAAAAAAAAAAAAAA
AAA

Homology of Contig U35_16230 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g52720.1	207	5e-53
Arabidopsis v10	None