barSeed - Barley Seed Development Database

Probe CUST_13357_PI390587928

Source Contig U35_393

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13357_PI390587928	Hv_44K_v2	GGTGATGTAACGGATGTTGAACTTAGATTATGTATCTGTTGTCCACTGGTAATTCTTTTG	2813	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45952.1	1218	2e-24	132 - 191	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003
JLOC1	JLOC1_29791.1	1205	8e-25	119 - 178	100	60 / 60	minus
Harvest21	ABC00685	2872	3e-25	2690 - 2749	100	60 / 60	plus	ABC00685
Harvest21	ABC00297	864	3e-25	76 - 135	100	60 / 60	minus	ABC00297
Harvest35	U35_393	2961	3e-25	2814 - 2873	100	60 / 60	plus

Contig Sequence (2961 bp)

>U35_393 2961 Hv_44K_v2
GGGCTTCCTCCCTTCACCCCTTCCATTCTCCCCGGGAGCGCCGCCGCTTCCCTCATCTCC
CACACTCCCTCCTCTCGGCCCGGGAGGCGGAAGAGGAACCAACCCCAAGGAACCATATTT
CCAGCTGTGACACTCAAACACAGCCAAGATGGTGAAGTTTACAGCGGAGGAGCTCCGCGG
AATCATGGACAAGAAAAACAATATCCGTAACATGTCGGTTATTGCTCATGTAGACCACGG
CAAGTCTACGCTTACCGATTCCCTTGTGGCAGCTGCTGGAATTATTGCCCAGGAAGTTGC
TGGTGATGTTCGCATGACCGATACCCGTGCAGATGAGGCAGAGCGTGGTATCACAATCAA
ATCCACTGGTATCTCTCTCTTCTACCAGATGACTCCTGAATCACTTGAGATGTACAAGGG
CGATCGTGATGGAGACGAATACCTGATCAACCTTATTGACTCACCTGGCCACGTTGACTT
TTCTTCGGAAGTCACAGCTGCTCTTCGTATCACTGATGGAGCTTTGGTGGTTGTTGACTG
TATTGAAGGTGTCTGTGTGCAGACCGAAACTGTCCTGCGCCAAGCTCTTGGTGAGAGGAT
TAGGCCAGTCCTTACTGTGAACAAGATGGACAGATGCTTCCTTGAGCTTCAAGTGGAAGG
TGAGGAAGCATATCAGACTTTCTCCCGTGTTATTGAAAATGCCAATGTCATCATGGCAAC
ATATGAAGATGTGCTCCTGGGTGATGTCCAAGTGTACCCGGAAAAGGGTACTGTTGCATT
CTCTGCTGGTTTGCATGGGTGGGCTTTCACCCTTACAAACTTTGCCAAGATGTATGCCTC
CAAGTTTGGTGTTGATGAGGCAAAGATGATGGAGAGGCTGTGGGGTGAGAACTTCTTTGA
CCCAGCCACAAAGAAATGGACCTCCAAGAACACTGGGACAGCTACCTGCAAGAGAGGTTT
CGTTCAGTTCTGCTATGAGCCAATCAAGCAAATCATAGCCACCTGCATGAATGACCAGAA
GGATAAGTTGTGGCCTATGTTGAAGAAGCTTGGTGTGACCATGAAGAATGATGAGAAGGA
CTTGATGGGCAAGGCTCTCATGAAGCGTGTGATGCAAACTTGGCTGCCTGCCAGTCGTGC
TCTGCTTGAGATGATGATCTTTCACCTTCCCTCTCCTTCAAAGGCCCAGAGGTATCGTGT
GGAGAACTTATACGAGGGCCCCCTTGATGACATTTATGCAAATGCTATCAGAAACTGTGA
TCCTGATGGTCCTCTTATGCTGTATGTGTCCAAGATGATTCCAGCATCTGACAAGGGTAG
ATTCTTTGCCTTCGGACGTGTTTTTGCCGGGAGGGTTGCAACTGGCATGAAGGTCCGTAT
CATGGGTCCCAACTTTGTTCCCGGCCAGAAGAAGGATCTGTATGTGAAGAGTGTCCAGCG
TACTGTTATCTGGATGGGAAAGAAGCAAGAATCTGTTGAGGATGTTCCCTGTGGTAACAC
TGTTGCTTTGGTTGGTTTGGATCAGTTCATCACAAAGAATGCAACCCTGACGAATGAGAA
GGAAGTTGATGCCTGCCCAATCAGGGCAATGAAGTTCTCTGTGTCCCCTGTTGTGCGTGT
TGCTGTTCAGTGTAAGGTGGCTTCTGATCTTCCCAAGCTTGTTGAGGGTTTGAAGCGTCT
GGCAAAGTCTGATCCTATGGTTCTCTGTACCATTGAAGAGTCTGGCGAGCATATCATTGC
TGGAGCTGGAGAGCTTCACCTTGAAATCTGTTTGAAGGATCTGCAGGATGACTTCATGGG
TGGTGCTGAAATCATTGTTTCCCCTCCTGTCGTCTCCTTCCGCGAGACTGTTCTGGAGAA
GTCCTGCCGTACAGTCATGAGCAAGTCCCCCAACAAGCACAACCGTCTTTACATGGAAGC
TCGCCCATTGGAGGAGGGATTGGCTGAGGCTATTGATGATGGCCGCATTGGCCCACGTGA
TGATCCTAAGGTGCGCTCCAAGATCCTGTCTGAGGAGTTTGGTTGGGACAAGGATCTTGC
CAAGAAGATTTGGTGCTTTGGACCTGAGACGACTGGCCCCAACATGGTTGTTGACATGTG
TAAGGGAGTGCAATATCTCAATGAAATCAAGGACTCTGTTGTGGCTGGGTTCCAGTGGGC
ATCAAAGGAAGGTGCATTGGCTGAGGAAAACATGCGTGGCATTTGCTTTGAGGTCTGTGA
TGTTGTTCTCCACACTGATGCCATTCACAGGGGTGGTGGTCAGGTCATCCCAACGGCCAG
GAGGGTCATTTATGCTTCTCAGCTCACTGCCAAGCCAAGGCTGCTGGAGCCCGTCTACCT
GGTTGAGATCCAGGCCCCGGAGAATGCACTTGGTGGCATCTATGGTGTTCTGAACCAGAA
GAGAGGGCACGTGTTCGAGGAGATGCAGAGGCAAGGTACCCCGCTCTACAACATCAAGGC
CTACCTCCCCGTCATTGAGTCCTTTGGATTCTCAAGCACCCTGAGGGCCGCGACCTCCGG
CCAGGCCTTCCCCCAGTGTGTGTTTGACCACTGGGACATCATGGCTTCTGATCCTTTGGA
CCCGGGCACCCAGTCGGCGACGCTTGTCACGGAGATCCGCAAGAGGAAGGGTCTCAAGGA
GCAGATGACCCCTCTATCTGATTTCGAGGACAAGCTCTAAATTTTTGGTGCTGTTATCCC
TTACCTGCTCTTGTTGAGTTGAACTATTTTGTATCGATGAGTCAATCTTACTATCTTGCT
GTTAAATGACCTGTTTGTGGTGATACTGGGAAGAGAACTATGTTTTGATGTCTGGTGATG
TAACGGATGTTGAACTTAGATTATGTATCTGTTGTCCACTGGTAATTCTTTTGCTCTTAA
AAAAAAAAAAAAAAAATCTCGAGAGAGTTACCTGGTTCTTCGTTGATATAATGTTGCTCC
TATAAAAAAAAAAAAAAAAAA

Homology of Contig U35_393 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g32030.1	844	protein\|elongation factor, putative, expressed
Brachypodium v1_2	Bradi3g44480.1	844
Arabidopsis v10	AT1G56070.1	843	\| Symbols: LOS1 \| Ribosomal protein S5/Elongation factor G/III/V family protein \| chr1:20968245-20971077 REVERSE LENGTH=843