barSeed - Barley Seed Development Database

Probe CUST_13328_PI390587928

Source Contig U35_30534

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13328_PI390587928	Hv_44K_v2	CAACTAAAGAAGAGCAAGAGAATGGGAAGTATCATGAGCCCACTAAGGTGAATGGTAGGA	339	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57927.3	10063	2e-24	9459 - 9518	100	60 / 60	plus	ABC20754 ABC30492
JLOC1	JLOC1_37616.3	11550	8e-25	8462 - 8521	100	60 / 60	plus
JLOC1	JLOC1_37616.2	11556	8e-25	8468 - 8527	100	60 / 60	plus
JLOC1	JLOC1_37616.1	12445	8e-25	9357 - 9416	100	60 / 60	plus
Harvest21	ABC30492	413	3e-25	340 - 399	100	60 / 60	plus	ABC30492
Harvest35	U35_30534	413	3e-25	340 - 399	100	60 / 60	plus

Contig Sequence (413 bp)

>U35_30534 413 Hv_44K_v2
CTTGCCCAAATTAAGGAGATTAACAAGAGAAATGATAACCTGAGGACTTATTTAGGTGCA
GCTATGAAGAACAGATGCAAAAGGCAAAAGGAAACGGACTCGTTGTATTAAAAAATACAG
TCATTGGAAGAAGAGAAGATGAGACAAAGTGCTCTATGGACTAAAGTAGAAAAAACGTGA
TGGAAATGGAAAAGGATAAAAAGAGAATGGACGATGAGTTAGCATCTCAGAAATTGGTTG
TGCAATAGTTACTTCAGGAGGCTGCTAATAGAGAGGCATATGAACTGGAGCTGGCAAACA
CGGAAGTTGAGGAAGTCGAGAAAGGAGTAGAGGAACACACAACTAAAGAAGAGCAAGAGA
ATGGGAAGTATCATGAGCCCACTAAGGTGAATGGTAGGAGGAAAAAAAAAAAA

Homology of Contig U35_30534 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None