barSeed - Barley Seed Development Database

Probe CUST_13277_PI390587928

Source Contig U35_18557

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13277_PI390587928	Hv_44K_v2	CTTGGCTTTGATGATACTGTGTGCCTGAACAAAGTTTCAGTGACTAGTCCGGTTAAAAAA	1290	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358243	3906	9e-22	3847 - 3901	100	55 / 55	plus	ABC09322 ABC11562 ABC12169 ABC15296 ABC23889 ABC45897
JLOC1	JLOC1_12928.2	1423	5e-22	1340 - 1394	100	55 / 55	plus
JLOC1	JLOC1_12928.1	1433	5e-22	1350 - 1404	100	55 / 55	plus
Harvest21	ABC09322	1361	3e-25	1291 - 1350	100	60 / 60	plus	ABC09322
Harvest35	U35_18557	1361	3e-25	1291 - 1350	100	60 / 60	plus

Contig Sequence (1361 bp)

>U35_18557 1361 Hv_44K_v2
GCTTTACCCGTGAGAATCCACCCGACCAGCGGCCGCGCCGCGCGCAGCAGGAGCCCCTCG
ACGGCGGCCGCCGGTGCTAGGGTTCTTCACGCCCACCTTCCTCATACCGGAATCTCCCCC
GATGGAGGCGGCCGCCGTCGCTTCCTCCGGCTCCGGGTTGCGCTGCTCGCTTAATCCCGC
CCCGAGCCAGCATAGGAGAGGCGCGCGCGTCGGCTTAGCGGCCAAGAGGCAGCAGTGCTG
CGCCGTCGCTTGCGGGCGGTTTCTGCTTCGCCCCAACGCTCGCGTATACACGGCGGCATC
GGCATCCGCGTCGGCGGTGATGGCTAGCGGAGCTGGGGACTCCGGGGTGAGGAGGAAGAG
GCTCGCGGTGTTCGTGTCCGGCGGGGGCTCCAACTTCCGGTCGATCCACGGGGCCGCCCT
GGGTGGGAAGGTGAACGGGGATGTGGTTGCGCTCGTCACCGATAAGCCAGGCTGCGGTGG
CGCCGAGTATGCAAGGTGCAATGGCATTCCCGTGGTCGTGTTTCCCAAGTCGAAATCCGC
ACCAGAGGGGGTCTCCACAGATGAACTTCTGAATGCTCTGAGGGATCTGAAGGTAGACTT
CATTCTACTTGCTGGTTACTTGAAGCTCATACCTGGTGAGCTAGTTCAGGCATTTCCCAG
ATCCATGCTGAATATACACCCTTCACTGCTCCCTGCATTTGGAGGCAAGGGTTATTATGG
TTTAAAAGTGCATAAAGCAGTCATTGCATCTGGAGCCAGATACTCAGGACCAACTGTGCA
CTTTGTGGATGAGCAGTTCGACACAGGGAAAACCTTAGCCCAAAGAGTTGTTCCTGTGTT
AGCCAATGATACTCCAGAGCAATTGGCTGCAAGGGTTCTTCATGAGGAGAACCAAGTTTA
CGTTGAGGCAGTTGCTGCCTTGTGCGAGGATCGAATTGTGTGGCGAGACGATGGTGTCCC
ACTTGTCAGAAGTCAAGCAAACCCCAATGCGTATACCTAATTCGTGATCTCTGTCCTGAG
ATCTCCTGAAAATTAATGAAGTTCCTAGTGTCCCCACCAAGTGCCAGTTTTCACCATGGC
ATGGAGTTAACACTTACACACACCGTTTGTCTGATTGAGTGAAATAACATGTCTGATAAT
CTTCGTCCCAAAATAATGTGTACCTTGCACTGTGTTTAACTCATTGTATGGCTTAGCTTT
GATGATAATCTGTGCCTGAAATAACATGTCTGTTAATCTGGTCCCAGAAGCATAATGCCT
ACCTTGCGCTGTATTCAACTCATTGTATGGCTTGGCTTTGATGATACTGTGTGCCTGAAC
AAAGTTTCAGTGACTAGTCCGGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18557 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39160.1	291	2e-144	protein\|formyl transferase, putative, expressed
Brachypodium v1_2	Bradi3g39640.2	295	7e-154
Arabidopsis v10	AT1G31220.1	292	3e-103	Formyl transferase \| chr1:11157064-11158408 FORWARD LENGTH=292