barSeed - Barley Seed Development Database

Probe CUST_13230_PI390587928

Source Contig U35_20883

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13230_PI390587928	Hv_44K_v2	CGGCTGTACTTATTGAAGTATTATTAAGTTTAGTCATTGAGTTGTTCCAGCGTTAGCAAA	592	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363707	2244	7e-23	2188 - 2244	100	57 / 57	plus	ABC14141 ABC14502
Harvest21	ABC14141	1208	3e-25	15 - 74	100	60 / 60	minus	ABC14141
Harvest21	ABC14140	671	4e-24	22 - 79	100	58 / 58	minus
Harvest35	U35_20883	667	3e-25	593 - 652	100	60 / 60	plus

Contig Sequence (667 bp)

>U35_20883 667 Hv_44K_v2
TTGCATTCATAAAGAATGGTACTATCAGTGGGAAGATTGGCAAGGAGATTCTTGTTGAGC
TCATTACTAAAGGCGGAACTGTCAAGTCGGTGATAGAGGAGAAAGATTTGGTTCAGATAG
CAGATCCAGCAGCAATTGAGGCCATGGTAGATAAAGTACTCGCCGAGAATCCAAAGCAAC
TTGAGCAGTATCGGGCTGGGAAAACCAAGTTGCAGGGATTTTTCGCTGGGCAGGTGATGA
AAGCATCGAAAGGTAAAGCAAGTCCTGTTTTATTGAACAAAATCCTCGGGGAGAAGTTGA
AGGGTAATTAAAATTGCCGAGGTGTTTCGGCACAGAGAGAATATCTTGCCCTTGATGAGT
GAACCATCAGATTACAACTAAAAGTGGATTTTGGAAAAGCAATCCAGTTCACATGACACA
AAGATGAAGGATATGCATGGTATGTGTTTGAGCTGATAATAGACTGGAATGGTGTGGTGT
GCAGATGAATCAGTTGCGTATGCTTACATGTTTTTACTCGTCGTCTTTTTTGCATTTGAT
CTTATGCAGCTGTAAACTCATTTGTAAATTGGATACATCAGTATCATGAATGCGGCTGTA
CTTATTGAAGTATTATTAAGTTTAGTCATTGAGTTGTTCCAGCGTTAGCAAAAAAAAAAA
AAAAAAA

Homology of Contig U35_20883 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g34210.2	545	4e-53	protein\|aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed
Brachypodium v1_2	Bradi4g16830.2	505	4e-54
Arabidopsis v10	None