barSeed - Barley Seed Development Database

Probe CUST_13229_PI390587928

Source Contig U35_20884

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13229_PI390587928	Hv_44K_v2	AGAATCACATTCTTTTGTAAAAACACTTACTTGGAGTTTGGAGTGTTGATTACCTTTCGC	848	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363707	2244	2e-24	1902 - 1961	100	60 / 60	plus	ABC14141 ABC14502
MLOC	MLOC_73744.2	1326	2e-24	273 - 332	100	60 / 60	minus	ABC14141
Harvest21	ABC14141	1208	3e-25	301 - 360	100	60 / 60	minus	ABC14141
Harvest35	U35_20884	1168	3e-25	849 - 908	100	60 / 60	plus

Contig Sequence (1168 bp)

>U35_20884 1168 Hv_44K_v2
GTAGATTATGAGATATCCCGACAGATTCTTCTTCACAAAGAAAGCCAGGCTGACAAAATT
GTACAAGAAACCCGTCTATGGGATGAATCTTCTCAGAAAACTTTTACAATGCGGAAAAAG
GAGGGACTTGCCGACTACAGATATTTTCCTGAGCCTGATCTTCCTGAAGTTGTTCTGACT
AGTGAGTACATTGATGAAATTCGTAATTCAATGCCGGAGCTTCCAGAGGCAAAGCGTAGG
CGTTATGAGAACATGGGGCTCAGCATGCAAGATGTTATTTTCCTTGCTAATGACGATATT
GTTGCTCATTTCTTCGATTCTACACTTGAGCGTGGTGCTGATGCAAAGCTGGCTGCTAAT
TGGATCATGGGTGACATTACGGCTTATCTGAAGAATGAAAAGCTCTCTATTGATGAAATT
AAATTAACACCTCTTGAGCTTTCTGAACTGATTGCATTCATAAAGAATGGTACTATCAGT
GGGAAGATTGGCAAGGAGATTCTTGTTGAGCTCATTACTAAAGGCGGAACTGTCAAGTCG
GTGATAGAGGAGAAAGATTTGGTTCAGATAGCAGATCCAGCAGCAATTGAGGCCATGGTA
GATAAAGTACTCGCCGAGAATCCAAAGCAACTTGAGCAGTATCGGGCTGGGAAAACCAAG
TTGCAGGGATTTTTCGCTGGGCAGGTGATGAAAGCATCGAAAGGTAAAGCAAGTCCTGTT
TTATTGAACAAAATCCTCGGGGAGAAGTTGAAGGGTAATTAAAATTGCCGAGGTGTTTCG
GCACAGAGAGAATATCTTGCCCTTGATGAGTGAACCATCAGATTACAACTAAAGTGAAAC
CCCGTAGCAGAATCACATTCTTTTGTAAAAACACTTACTTGGAGTTTGGAGTGTTGATTA
CCTTTCGCTCTCTTTTCACTACAGAGTGGATTTTGGAAAAGCAATCCAGTTCACATGACA
CAAAGATGAAGGATATGCATGGTATGTGTTTGAGCTGATAATAGACTGGAATGGTGTGGT
GTGCAGATGAATCAGTTGCGTATGCTTACATGTTTTACTCGTCGTCTTTTTTGCATTTGA
TCTTATGCAGCTGTAAACTCATTTGTAAATTGGATACATCAGTATCATGAATGCGGCTGT
ACTTATTGAAGTATTATTAAGTTAAGTC

Homology of Contig U35_20884 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g34210.2	545	3e-158	protein\|aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed
Brachypodium v1_2	Bradi4g16830.2	505	5e-164
Arabidopsis v10	AT1G48520.1	550	2e-125	\| Symbols: GATB \| GLU-ADT subunit B \| chr1:17940185-17942540 FORWARD LENGTH=550