barSeed - Barley Seed Development Database

Probe CUST_13210_PI390587928

Source Contig U35_14576

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13210_PI390587928	Hv_44K_v2	TCTGAAGAACTATGACCCGCAAAAGGACAAACGTTTCAGTGGCTCTGTTAAGCTTCCTCA	503	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359211	1073	2e-24	168 - 227	100	60 / 60	plus	ABC02777
MLOC	AK372841	3912	2e-24	1850 - 1909	100	60 / 60	minus	ABC02777 ABC08483 ABC08957
MLOC	MLOC_75379.1	888	2e-24	261 - 320	100	60 / 60	plus	ABC02777
MLOC	MLOC_75379.2	1237	2e-24	368 - 427	100	60 / 60	plus	ABC02777
JLOC1	JLOC1_50285.1	1246	8e-25	261 - 320	100	60 / 60	plus
Harvest21	ABC02777	1057	3e-25	220 - 279	100	60 / 60	plus	ABC02777
Harvest35	U35_14576	643	3e-25	504 - 563	100	60 / 60	plus
Harvest35	U35_14574	1039	3e-25	186 - 245	100	60 / 60	plus

Contig Sequence (643 bp)

>U35_14576 643 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGCATAGTATGAAAGGCAAAACCAATCATCAAGATTTAGATGA
AGGAAAATAGATAGCTTGGCGATATTCCATACTCCAAAACTTCCGCAGGATACAAAAAAC
ATGCTGGTGCAATGCAAAATAACAGCTCATTCTAACAATGTAGATAAAGAAAGAGTCTAC
TCAGTGTCATCGACGACCTTGGTTCCCAGCCCCTTCAAACCCTCAGCAGGCACCTCGGCA
ACGGTGACGAGTGAGTAGAGCTCCTCCTTGGCGTCCTCCTCGTCATTCCTCCTGCGGGCA
ATCCTCACGCGAACCCTACGGGGCACGCTTCTGATCCCACTGCTCCAGATGAGCCTCCCT
GCATCGTCGCGGAACAGTGCTCCCACCGCCGGCGCCATGAGTAAGTTGCAGAGCGATGCC
CTGAGGGAGGCTATCACAAACATTACCAATGACTGCCGTGAGAAGAACCGCAAGTTCGTT
GAAACCATTGAGCTGCAGATTGGTCTGAAGAACTATGACCCGCAAAAGGACAAACGTTTC
AGTGGCTCTGTTAAGCTTCCTCACATCCCTCGCCCAAAGATGAGGGTTTGCATGCTTGGT
GATGCCCAGCATGTTGAAGAGGCAGGGAAAATGGGCCTTGACT

Homology of Contig U35_14576 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None