- Probe CUST_13136_PI390587928
- Source Contig U35_14598
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_13136_PI390587928 | Hv_44K_v2 | ATACTTTCTGTTCTATTCTGTTCTAATAGCGTGCGCGCGTCCGTCCTTGTCTGTCTGTAT | 573 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK366997 | 3284 | 2e-24 | 1525 - 1584 | 100 | 60 / 60 | minus | ABC01883 ABC01885 ABC06326 ABC06921 ABC21171 ABC37654 |
MLOC | AK357073 | 968 | 2e-24 | 791 - 850 | 100 | 60 / 60 | plus | ABC01883 ABC01885 ABC37654 |
MLOC | MLOC_14205.1 | 1439 | 2e-24 | 337 - 396 | 100 | 60 / 60 | minus | ABC01883 ABC01885 ABC37654 |
JLOC1 | JLOC1_9691.1 | 1300 | 8e-25 | 338 - 397 | 100 | 60 / 60 | minus | |
Harvest21 | ABC01886 | 575 | 3e-25 | 107 - 166 | 100 | 60 / 60 | minus | |
Harvest21 | ABC01885 | 296 | 3e-25 | 90 - 149 | 100 | 60 / 60 | plus | ABC01885 |
Harvest21 | ABC01884 | 791 | 3e-25 | 587 - 646 | 100 | 60 / 60 | plus | |
Harvest21 | ABC01883 | 781 | 3e-25 | 574 - 633 | 100 | 60 / 60 | plus | ABC01883 |
Harvest21 | ABC01882 | 793 | 3e-25 | 584 - 643 | 100 | 60 / 60 | plus | |
Harvest35 | U35_14599 | 796 | 3e-25 | 587 - 646 | 100 | 60 / 60 | plus | |
Harvest35 | U35_14598 | 664 | 3e-25 | 574 - 633 | 100 | 60 / 60 | plus | |
Harvest35 | U35_14597 | 701 | 3e-25 | 576 - 635 | 100 | 60 / 60 | plus |
Contig Sequence (664 bp)
>U35_14598 664 Hv_44K_v2 TAATGACATGATCACAGCATCATGCCCTTTCAAGAGGAGGTGGCTTTCTTCAGGTACGCA ATGAGATCAGCACGGTCCTGTGGCTTCTTCAGACCAGGGAAGACCATCTTGGTTCCAGGA ATGTACTTCTTGGGATTAAGCAAGTAGTCATACAGAGTGTTCTCCTCCCACTCCACAGCC TTGTTCTTGTTTGCCGCAGAGTAGGAGTAACCGCTTGAATTCAAGCCGGCAACGGCCGCT GCGAGGCCATCTGCGTCGACGGCACCAAGCGCCTCTGCCACATCCGGGGCAAGATGCACA AGAAGGTCTGGATCGCCGCCGGGGACATCGTCCTCGTCGGCCTCCGCGACTACCAGGACG ACAAGGCCGACGTCATCCTCAAGTACATGAACGACGAGGCCAGGCTGCTCAAGGCCTACG GGGAGCTCCCCGACACGCTCCGCCTCAACGAGGGAGTCGACGTCGACGGACCAGAGGAGG GCGAGGGCGACAGCGACTACATCCAATTCGAGGACGAGGACATCGACAAGATCTAAGCTT TTTCTTCTCCTCGCCTCGCCTCGCCTCGCCTCTATACTTTCTGTTCTATTCTGTTCTAAT AGCGTGCGCGCGTCCGTCCTTGTCTGTCTGTATCGGTCGGTGGGCTGTTGTGGATTGATG GATT
Homology of Contig U35_14598 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os06g23440.1 | 145 | 3e-54 | protein|eukaryotic translation initiation factor 1A, putative, expressed |
Brachypodium v1_2 | Bradi1g39720.1 | 145 | 1e-54 | |
Arabidopsis v10 | None |