barSeed - Barley Seed Development Database

Probe CUST_13128_PI390587928

Source Contig U35_26572

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13128_PI390587928	Hv_44K_v2	TTATTAGGCCTTCTGCAGTGTCTGCTACTCAAACGAATGCAACCCCCAAAAAGAGTGTTT	429	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372211	3891	2e-24	1876 - 1935	100	60 / 60	plus	ABC11306
MLOC	MLOC_10219.1	3721	2e-24	2072 - 2131	100	60 / 60	minus	ABC11306
MLOC	MLOC_10219.2	3737	2e-24	2072 - 2131	100	60 / 60	minus	ABC11306
MLOC	MLOC_10219.3	3726	2e-24	2072 - 2131	100	60 / 60	minus	ABC11306
JLOC1	JLOC1_6670.3	3855	8e-25	1712 - 1771	100	60 / 60	plus
JLOC1	JLOC1_6670.2	3844	8e-25	1701 - 1760	100	60 / 60	plus
JLOC1	JLOC1_6670.1	3839	8e-25	1696 - 1755	100	60 / 60	plus
Harvest21	ABC24585	504	3e-25	430 - 489	100	60 / 60	plus
Harvest35	U35_26572	505	3e-25	430 - 489	100	60 / 60	plus

Contig Sequence (505 bp)

>U35_26572 505 Hv_44K_v2
GTCCTTTTGGTGGACTTGTCAACAATACCTACGACTCTAACAGCCTCGCAGTGCATCCTG
GCCCCCAGACGCTCCGGTGTCAACAGTGCAATGATAGATGTGAGCAAGAAGTCACAACAA
TCGTTAAAGGGAGTGGCATTACAGCTGACCAGGGAGGTCTGCCTTCCCTGCTTCAGAATG
GCAGCATGATGGGTCTTAACAATGGACTTGATGTAATCAAGGTTAGAGATGATCAGATGG
TGTTGAAGTCAAAAATATTGAATCTGCAGAAGAAGTGGAACGAGTACTGCCTGCGGCTCC
ACCAAGGATCCCAGAGGATCAACACAGGTCCTTACCAGTTATTTCCAAATTATGCTGCTG
TTCCAGTTGACACAGAAAGAGCAACAATTCTGAGCAAAGGTTCCGAGTCAGTTACACTTC
AAAGGGATGTTATTAGGCCTTCTGCAGTGTCTGCTACTCAAACGAATGCAACCCCCAAAA
AGAGTGTTTCACCTCCATCTATCTC

Homology of Contig U35_26572 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g01360.1	1130	1e-64	protein\|expressed protein
Brachypodium v1_2	Bradi4g26750.1	1123	1e-71
Arabidopsis v10	None